Staphylothermus marinus: Smar_0842
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Entry
Smar_0842 CDS
T00485
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smr
Staphylothermus marinus
Pathway
smr03410
Base excision repair
smr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Smar_0842
03430 Mismatch repair
Smar_0842
03440 Homologous recombination
Smar_0842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smr03400
]
Smar_0842
DNA repair and recombination proteins [BR:
smr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Smar_0842
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Smar_0842
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Smar_0842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2170
DUF5761
Motif
Other DBs
NCBI-ProteinID:
ABN69943
UniProt:
A3DMT3
LinkDB
All DBs
Position
831238..832407
Genome browser
AA seq
389 aa
AA seq
DB search
MSNTLNDILKRINEYGYVRIVPRIDLDSLVASSILFENLNEHRIKTSINYDPKAILDQKD
EPTILINLPKTREQTDMFTINFNMRESVSAYVSYYLDKIYGVSIYDKILSIATGIYQSLD
TVEGFKGIESEILKELTSKEIIEYEPGFRFWGRLKFDLVNSIYRTLIPFIPGLTGEPEKI
NELLSHIIGGRTEIVKHIHIEQNKDLAAKFLEHLLNNLSVIIGVSNAKKIVRKILGNVYI
AKINNRIIELNEVVGLLNIYLSLKKNNPRYLSIISVDPNILFEITTLSDNVIDELIIDIS
IALNQFIKTKQNIFEIEESLERPEIFIEILKSMDMLPENKPIIIYYDGEHYTSLSELFRI
GNEDAETLYAYCDENQLCMVDRDGNIIKA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaatacattaaatgatattctaaaaagaataaacgaatatggctatgtgcggata
gttccaagaatagatctagattcactagtagcttctagtatactgtttgaaaacctaaat
gaacatagaattaaaacaagcataaactatgatcccaaagcaatacttgaccaaaaagac
gaacccacaatattgattaacttgcctaaaactagggagcaaactgacatgtttacaata
aactttaatatgagagaaagcgtttcagcatatgtttcatactatcttgacaaaatatat
ggtgtatcaatatatgataaaatattgtctatagcaacaggtatttaccaaagcttagat
actgttgaaggatttaaagggattgagtcagaaattttgaaagaactgactagtaaggaa
atcatagaatatgaacctggattcaggttttggggtaggttaaagtttgatctagtaaat
tcaatctatagaacattaataccatttattccaggattaacgggggaaccagaaaaaatc
aatgaattgttaagccatattattggtggaagaacagagatagttaaacatattcatata
gaacaaaataaggatctagctgctaaattccttgaacacttattaaataatttaagtgtg
attataggtgtttctaatgctaaaaaaatcgttagaaaaatacttgggaacgtctatatt
gcaaaaatcaataatagaattatcgagttaaacgaagttgtaggattacttaatatatat
ttatctcttaagaaaaacaatcctagatacttatcaattataagtgttgatccaaacatt
ttatttgaaataacaactctaagtgataacgttatagatgaattaattattgatatatcg
attgcgctaaatcaattcattaaaacaaaacagaatattttcgaaattgaagaaagcctt
gagagacctgagatatttattgagatattaaaatctatggatatgctccccgaaaataag
cccatcataatctattatgatggtgaacactatacaagcctaagcgagcttttccggata
ggtaacgaagatgctgagacactatatgcatattgcgatgaaaaccagttatgcatggtg
gatcgtgatggcaatattatcaaggcttaa
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