KEGG   Stenotrophomonas maltophilia D457: SMD_2199Help
Entry
SMD_2199          CDS       T02061                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smz  Stenotrophomonas maltophilia D457
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smz00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SMD_2199
Enzymes [BR:smz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SMD_2199
DNA repair and recombination proteins [BR:smz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SMD_2199
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
complement(2453851..2456400)
Genome map
AA seq 849 aa AA seqDB search
MSLVEYRRKRRFDQTKEPEPGKALPKGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYAAFEGEIPKGQYGGGHVAQFDHGVWATQGDPEAQLAK
GHLRFELFGTKLKGGWHLVRSGRPARQPQWLLFKDDDEFASDIEADDLLGDVAEAPPEDL
KRAGAGKAAKKRLTAVPARRARRKNWAKKALALSKAKRAAAPSGPFEPQLAKLGEAPPQG
GQWVHEIKWDGYRILATVAEGNVQLWSRNALEWTAKLPEIRDAIAALGLRSAALDGELIA
GAGTKEDFNLLQATLSGEKQGVLTYALFDLLHLDGVDVADAPLLERKTLLQSVLEGQGSP
LAFSSHVQGDGDQAYRLAGERHFEGIISKRADRSYHSGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLARPDATHGWLYAGRVGSGFSDELIGDISKRIKGGGGRKPTAYVPTQ
DTDLRAATWFEPRFVVEVFYRGIGGQQLLRQASLKAVRADKDIADLADSDRAGAAPAAAR
SQAPARRGRRVERAPATDRAPPVLSSPGKILFPGDGYTKQDVWDYYAAVMEHLLPEVVDR
PLSIIRCPSGTAKPCFFQKHHTAGLALVDSVRLKQESGINAHYLVVRDAASLLELVQFNA
LEFHPWGSHAEAPDSADRVVFDLDPGPDVPFAEVKKAATDIRKLLAQLELESFLRVSGGK
GLHVVVPLNPGCDWDLTKRFAKGFADALAQSEPQRFLATATKSLRNKRIFVDYLRNGRGA
TAVASYSLRARPGAPVALPIAWGDLAKLKRADAFTIKDVPAKLRRRRKDPWAGIAEVKQN
LARWARADP
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atgtccctggtcgagtatcgccgcaagcgtcgttttgaccagaccaaggagcccgagccg
ggcaaggcgctgccgaaaggccagcgcgccattttcgtggtgcagctgcatcatgccagc
cgcaggcactatgacttccgcctgcaggttggcgatgcgctgaagagctgggcggtgccc
aaaggccccagttacgacccgaaggtcaagcgcatggcggtggaagtggaagaccacccg
gtggactacgcggcgttcgagggtgagattcccaagggccagtacggcggcggccatgtc
gcccagtttgaccacggtgtatgggccacgcagggcgatccggaagcccagctcgccaag
ggccatctgcgcttcgagctgttcggtaccaagttgaaaggcggctggcatctggtccgg
tcgggaaggcccgcgcgccagccacagtggctgctgttcaaggacgacgacgaatttgcc
agcgatatcgaggcagacgatctgctgggggacgtcgctgaagcgccaccggaggatctg
aagcgtgccggcgctggcaaggccgcgaagaagcggctgacggcggtacctgccagacgc
gcccggagaaagaactgggcgaagaaggccctggcgctcagcaaggcgaaaagggcggca
gcgccgtccgggccgtttgagccgcagttggccaagctgggcgaagcgccgccccagggc
gggcagtgggtgcatgagatcaaatgggacgggtaccgcatccttgctacggtggctgag
ggcaacgtgcagctgtggtcacggaacgcgctggaatggaccgccaaacttcccgaaata
cgtgatgcgatcgcggccctgggcctgaggtcggcggcactggacggcgagctgatcgcc
ggcgccggcaccaaggaagacttcaacctgctgcaggccacgctttccggcgagaagcaa
ggcgtcctgacgtatgcgctgttcgatctgctgcatcttgatggcgtggatgtggccgat
gcgcccctgctggagcgcaagaccctgctgcaatcggtgctggaggggcagggcagccca
ttggcattcagttcgcatgtacagggggatggcgaccaggcctatcgtctggccggtgag
cggcacttcgagggcatcatttccaagcgcgccgatcgcagctaccacagcggccgcagc
gaggactggcgcaagacgaagcagctggccagcgacgagttcgcggtggtgggctacacc
gcacccaaaggcagccgcaccggctttggttcgctgctgctggcccggccagacgcaacg
catggctggctctacgcagggcgcgtcgggtccgggttctcggatgaactgattggcgac
atcagcaagcgcatcaagggcggcggcggccgcaagccaaccgcgtacgtgcccacgcag
gacaccgatctgcgcgccgcgacctggttcgaaccgcgtttcgtggtggaggtcttctac
cgcggaatcggtgggcagcaactgttgcgccaggcgtcgctgaaggcggtgcgggcggac
aaggatatcgccgacctcgccgattccgatcgcgccggagcggccccggccgctgcgcgg
tcgcaagcgcccgcgcggcgtgggcgccgggtggaaagggcgccggcaacggatcgcgcg
ccccccgtgctgtcgtccccaggcaagatcctgtttcccggcgacggctacaccaagcag
gacgtgtgggattactacgcagcagtgatggagcacctcctgcccgaggtggtggatcgt
ccgctgtcgatcatccgctgccccagtggcaccgcaaagccctgcttcttccagaaacac
catacggccgggctggcgctggtcgattcggtaaggctgaagcaggaaagcggcatcaac
gcccattacctggtggtgcgggacgcagccagcctgctggaactggtgcagttcaacgcg
ttggagttccacccttggggcagccacgccgaggcgcccgacagtgccgaccgggtggtg
ttcgatctggatcccggaccggatgtgccctttgccgaagtcaagaaagcggcaaccgac
atccggaaactgctggcgcagctggaactggaatcgttcctgcgagtctccggcggcaag
ggcctgcacgtggtcgtgccgctcaacccagggtgcgattgggacctgaccaagcgtttt
gcgaagggtttcgccgatgcattggcacagtccgaaccgcagcggttcctggcaaccgcc
accaagagcctgcgcaacaagcggatcttcgtcgactatctgcgcaatgggcgcggtgca
acggcggtcgcgtcctattcgttgcgcgcccggccgggcgcgccggtggcactgccgatc
gcctggggtgatctggcgaaactcaagcgcgccgacgccttcacgatcaaggacgtaccc
gcaaagctcagacgtcgccgcaaggacccttgggccggcatcgcggaagtgaagcagaat
ctcgcccgatgggcccgggcagacccgtag

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