Sneathia vaginalis: VC03_05740
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Entry
VC03_05740 CDS
T03854
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sns
Sneathia vaginalis
Pathway
sns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VC03_05740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sns03021
]
VC03_05740
03400 DNA repair and recombination proteins [BR:
sns03400
]
VC03_05740
Enzymes [BR:
sns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VC03_05740
Transcription machinery [BR:
sns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VC03_05740
DNA repair and recombination proteins [BR:
sns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VC03_05740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AKC95975
UniProt:
A0A0E3ZAK7
LinkDB
All DBs
Position
complement(1164406..1168377)
Genome browser
AA seq
1323 aa
AA seq
DB search
MSIKDFDSIQIKLASPEKIREWSYGEVTKAETINYRTLKPEPNGLFCEKIFGPSKDYECS
CGKYKRLKHKGIKCEKCGVDVTTSKVRRERMGHIELASPVAHIWYSKGTPNKMSLLLGIS
TKDLEAVLYHSKYIVIEGDDEYPAGSVIQSREYELIKTQNRENFVAKMGAEGVQDLLKKI
DLDEAEAKLDEELETVNSVQKKKKIVKRLKVIRDFKNSGNRPEWMILTVLPVMPADLRPM
VQLDGGRFATSDLNDLYRRVINRNARLKKLLEINAPETMIKNEKRMLQEAVDCLIDNGRR
GKAILSQNNRELKSLSSMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKKM
ALELYKPFLMRELVKRELASNIKIAKRMVEEEDECVWELIEEIIKNHPVLLNRAPTLHRL
SIQAFEPILIEGKAMRLHPLVCAAFNADFDGDQMAIHLVLSPESQMEAKLLMLSTSNLLS
PSSGKPIAVPSQDMVMGCYYMTTTKKGAKGEGLMFSNKNQLITAYQTGNIDTHAVAKVRI
DGKLVETTPGRVMFTTMLPPEVRDYGATYGKKQIAKLIAVLYKKYGAQKTSELLDKIKAF
GYHYGTLAGVTVSVEDLEIPATKKGLLEKADKQVLEVDEEYRQGKIINDERYRRTVEIWS
DVTEQVTKDMMDNLDEFNPVYMMATSGARGSIAQMRQLAGMRGLMADTQGRIMEKPIKVN
FREGLSVLDFFMSSHGARKGASDRALRTADSGYLTRRLVDISHEVIIKKDDCGCHGEGLL
VSSLVDSGEVIEPLAERIYGRRLAQDLVHDGVVVAKYNTMVTDELNEKIKELGITEVMVR
SPLTCKLENKGVCRKCYGIDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAQ
AAAVQSSYKAIDGGKIKYVDLELITDENGREIVATQTAKAIVGKHKYEIPSGSTLMFKNG
EKVKKGEVIVEFDPFQTPIISTKAGRISYRDIYIKENVDIKYNVIEKLAIKPSENNEINP
RAIIYDEKTNKKLAEYSIPYGAYIMHSEKEHVNSGEIIAKIVKTAEGTKDITGGLPRVQE
LFEARNPKGKALLSDVAGRVILKEDMNNKKGARTVIITDPETGEEIKQYVIQGGERLVVT
NEMLIEKGAKITDGPISPHDMLRVKGEVAAQQFILEAVQGVYRGQGVTVNDKHIEIIVKQ
MFQKVRILESGSTLFLEEELVDKKLIENINRKKIEEGKQPAKYEPIIQGITKAAVNTESF
ISASSFQETTKVLANAAIEGKVDRLEGLKENVIIGKKIPGGTGFKDYNDLKVEELEEISE
DEI
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaaagattttgacagcatacaaattaaactagcttctccagaaaaaattaga
gaatggtcttatggagaagtaactaaggctgaaactattaactacagaacattaaaacca
gaaccaaatggacttttttgtgaaaaaatatttggaccatcaaaagattatgaatgttca
tgtgggaagtataaaagactaaaacataaaggtataaaatgtgaaaaatgtggtgtagat
gttacaacatcaaaagttagacgtgaaagaatgggacacattgaactagcatcaccagtt
gcacatatttggtattctaaaggaacaccaaacaagatgagcttattacttggtatttct
actaaagatttagaagctgtcttataccactcaaaatatatagtaattgaaggggatgac
gagtacccagcaggttcagtaatacaaagtagagaatatgaacttattaaaactcaaaat
cgtgaaaattttgttgctaaaatgggtgctgaaggtgtacaagacttacttaaaaaaata
gatctagatgaagcagaagctaagttagatgaagagttagaaactgtaaattcagtacaa
aagaaaaagaaaatagttaagagattaaaggtaataagagactttaagaattcaggaaat
agacctgaatggatgatattaactgttttaccagtaatgccagctgatttaagacctatg
gttcaattagatggtggacgttttgcaacttcagatttaaatgatctatatagacgtgta
ataaatagaaatgcaagacttaaaaaactattagaaattaatgcacctgaaacaatgata
aaaaatgaaaaaagaatgttacaagaagcagtagactgtctaatagataatggtagaaga
ggtaaggcaatattatctcaaaataacagagaattaaagtcattatcttcaatgttaaaa
ggaaaacaaggaagatttagacaaaacttactaggtaaacgtgttgactattcaggaaga
tctgttatagtcgtaggaccaagtcttaaaatgaatcaatgtggtttacctaagaagatg
gctttagaactatacaagccattcttaatgagagaattagtaaaaagagaattagcttct
aacattaagatagcaaagagaatggttgaagaagaagatgaatgtgtatgggaattaata
gaagaaataattaagaatcacccagttttactaaacagagcaccgactctacacagacta
tctatacaagcatttgaacctatccttatagaaggtaaggctatgagactacatcctcta
gtttgtgctgcatttaatgccgacttcgatggtgaccaaatggcaatacacttggtatta
tcaccagaatcacaaatggaagcaaaactattgatgttatcaacaagtaacctattatca
ccatcaagtggtaagcctatagctgttccatcacaagatatggttatgggatgttactat
atgacaacaacaaaaaaaggagctaaaggtgaaggattaatgttctctaataagaatcag
ttaataactgcatatcaaacaggaaacattgatacacacgctgtagctaaagtaagaata
gatggaaaattagttgaaacaactccaggaagagttatgtttacaacaatgttacctcca
gaagtaagggattatggtgcaacttatggtaaaaaacaaattgcaaaattaatcgcagta
ctatacaagaagtatggagcacaaaaaacatcagaattattagataagattaaggcattt
ggttaccactacggaacattagcaggggtaacagtcagtgttgaagatctagaaatccca
gcaacaaagaagggtctattagaaaaagcagataagcaagttctagaagtagatgaagaa
tacagacaaggtaagataataaatgacgaaagatacagaagaactgttgaaatttggtca
gatgttacagaacaagttacaaaagatatgatggataaccttgatgaatttaacccagta
tacatgatggcaacttcaggagccagaggtagtatcgcacaaatgcgtcaactagcaggt
atgcgtggactaatggcagatacacaaggaagaatcatggaaaaacctataaaagtaaac
tttagagaaggacttagtgtattagatttcttcatgtcatcacacggggctagaaaagga
gcttcagatagagccttgagaactgccgattcaggatacttaacaagaagactagttgat
atttcacatgaagtaataatcaaaaaagatgattgtggatgtcatggagaaggactatta
gtatctagtttagttgattcaggtgaagtaatcgaaccattagcagaaagaatatatggt
agaagattagcacaagacttagttcatgacggagtagttgttgctaagtacaatactatg
gttacagatgaattaaatgaaaagattaaagagcttggtattacagaagttatggtaaga
agtccattaacatgtaaattagaaaataaaggggtatgtagaaaatgttatggtatagac
ttatctaaccataaagaaattctaaaaggtgaagcagtaggggttattgcagcacaatca
ataggagaacctggtacccaacttacaatgcgtactttccatacaggaggggtagcacaa
gcagctgctgttcaatcaagctataaggcaattgacggtggtaagattaaatatgtagac
ctagaattgattactgatgaaaatggtcgtgaaattgttgcaacacaaacagctaaggca
atagtaggaaaacataaatatgaaatacctagtggatcaacattaatgtttaaaaatgga
gaaaaggttaagaagggtgaagtaatagtagaattcgacccattccaaacaccaataatt
tcaactaaggcaggtagaatttcatatagagatatatatataaaggaaaatgtagatatt
aagtataatgttatagaaaaattagcaattaagcctagtgaaaataacgaaataaaccca
agagctattatctacgatgaaaagacaaataagaagttagcagaatacagtattccatat
ggggcatatataatgcacagtgaaaaggaacatgtaaattcaggagaaataattgcaaaa
atagtaaaaactgctgaaggtacaaaggatattacaggtggtcttccaagagtacaagaa
ttatttgaagcaagaaatccaaaaggtaaagctctattatcagatgttgcaggtagagta
atactaaaagaagatatgaataataagaagggggcacgtactgtaataataactgatcca
gaaactggtgaagaaattaaacagtatgtaatccaaggtggagaacgtttagttgttaca
aacgaaatgttaatagaaaaaggagctaaaattactgatggtcctatatcaccacatgat
atgttaagagttaaaggcgaagttgctgcacaacaatttatactagaagctgttcaaggt
gtatatagaggacaaggagttacagttaacgataagcatatagaaattattgttaaacaa
atgttccaaaaagttagaatacttgaatctggttcaactttattcttagaagaagaatta
gttgacaagaagttaattgaaaatattaacagaaagaagatagaagaaggtaaacaacct
gctaaatatgaacctattatacaaggtataactaaagcagctgttaatacagaaagcttt
atctctgcatcttcattccaagaaacaacaaaagtattagctaatgcagctatagaaggt
aaagttgatagattagaaggacttaaagaaaatgtaataattggtaagaagataccagga
ggaacaggatttaaggactataacgatttaaaagtagaagaattagaagaaatatcagag
gatgaaatatag
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integrated database retrieval system
