KEGG   Solanum tuberosum (potato): 102587267
Entry
102587267         CDS       T02981                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03082  ATP-dependent chromatin remodeling
sot03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102587267
   03083 Polycomb repressive complex
    102587267
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sot03036]
    102587267
Enzymes [BR:sot01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102587267
Chromosome and associated proteins [BR:sot03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102587267
   HDAC complexes
    Sin3A-HDAC complex
     102587267
    BRAF-HDAC complex
     102587267
    REST complex
     102587267
    SHIP complex
     102587267
    MiDAC complex
     102587267
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102587267
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102587267
  Chromatin remodeling factors
   NuRD complex
    102587267
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102587267
NCBI-ProteinID: XP_006347433
UniProt: M1CKF1
LinkDB
Position
Un
AA seq 471 aa
MDSSTVDGGASLPSTGTDARKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYL
HRRMEISRPFPAGADDIRRFHSPDYVDFLASVSPETLHDHTHSRHLKRFNVGEDCPVFDG
LFGFCQASAGGSIGAAVKLNRQDADITINWAGGLHHAKKSEASGFCYVNDIVLGILELLK
VHKRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGANQGKYYALN
VPLHDGMDDDSFGRLFRPTIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHAACL
RYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDYTLHV
EPNPMENLNSPRDLEKMRNILLEQISQLPHAPSVPFQTTPSTTEVPEEKEENMDRRPKPR
IWNGDGYESDADEDEKPRQRSSDSNLTPVESSDMRDVDDQANADDMVDDHP
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggactcctccaccgtagacggcggcgcatcgcttccatccaccggtaccgacgctagg
aagcgtcgtgtctcttacttttatgagccaaccatcggcgattattactacggccaaggt
catccgatgaagccgcaccgtatcagaatggcccacaatctcatcgtacactactaccta
cacaggcgtatggaaatcagtcgtccttttccggcgggagcggatgatatccgccgtttt
cactcgccggattatgttgacttccttgcttccgtttcaccggagactcttcatgaccat
acccattcgcgtcatctcaaaagatttaatgttggtgaggattgccctgttttcgatggg
ctttttgggttttgtcaagcttctgctggtggatctattggggctgcggttaagcttaat
cggcaggatgctgatataacgatcaactgggctggtggtctgcaccatgcaaagaaaagt
gaagcttctggtttttgctatgtgaatgatattgttcttggtattcttgagctcctcaaa
gtccacaagcgtgtgttgtacatagacattgatattcaccatggtgatggtgttgaggag
gcttttttcaccacagatagagtcatgacagtatctttccataagtttggggacttcttt
cctggtacggggcacatcaaagacattggtgcaaatcaggggaagtactatgccctaaat
gtcccattgcatgatgggatggatgacgatagtttcggtagactatttcgtcccacaata
caaaaagtcatggaggtctaccaacctgatgctgttgttcttcaatgtggggctgattca
ttggctggagacaggttgggttgcttcaacctgtctgtcaagggccatgccgcttgcctt
aggtacctcagatccttcaatgtccctctgatggttttgggtggtggaggttatactata
agaaatgtcgctaggtgctggtgctatgagacagcagttgcagttggggtagaacctgaa
aacaagttgccttacaacgagtattatgaatattttggcccagattatactcttcatgtt
gaaccaaaccccatggagaatctaaattcacctagggatctggagaagatgaggaacata
ttgcttgagcaaatctcacaattacctcatgcacctagtgtgccatttcaaaccactcct
tctacaacagaagttccagaggagaaagaggaaaatatggatcgaaggcctaaaccacgg
atatggaatggtgacggttatgagtctgatgccgatgaagacgagaaacctagacagcga
agttcagatagtaatcttactccagtagaatcatctgacatgagggatgtggacgaccaa
gccaatgcagatgacatggttgatgatcatccctag

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