Solanum tuberosum (potato): 102587267
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Entry
102587267 CDS
T02981
Name
(RefSeq) histone deacetylase 6-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03082
ATP-dependent chromatin remodeling
sot03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102587267
03083 Polycomb repressive complex
102587267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sot03036
]
102587267
Enzymes [BR:
sot01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102587267
Chromosome and associated proteins [BR:
sot03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
102587267
HDAC complexes
Sin3A-HDAC complex
102587267
BRAF-HDAC complex
102587267
REST complex
102587267
SHIP complex
102587267
MiDAC complex
102587267
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
102587267
Heterochromatin formation proteins
Other heterochromatin formation proteins
102587267
Chromatin remodeling factors
NuRD complex
102587267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
102587267
NCBI-ProteinID:
XP_006347433
UniProt:
M1CKF1
LinkDB
All DBs
Position
Un
AA seq
471 aa
AA seq
DB search
MDSSTVDGGASLPSTGTDARKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYL
HRRMEISRPFPAGADDIRRFHSPDYVDFLASVSPETLHDHTHSRHLKRFNVGEDCPVFDG
LFGFCQASAGGSIGAAVKLNRQDADITINWAGGLHHAKKSEASGFCYVNDIVLGILELLK
VHKRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGANQGKYYALN
VPLHDGMDDDSFGRLFRPTIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHAACL
RYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDYTLHV
EPNPMENLNSPRDLEKMRNILLEQISQLPHAPSVPFQTTPSTTEVPEEKEENMDRRPKPR
IWNGDGYESDADEDEKPRQRSSDSNLTPVESSDMRDVDDQANADDMVDDHP
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggactcctccaccgtagacggcggcgcatcgcttccatccaccggtaccgacgctagg
aagcgtcgtgtctcttacttttatgagccaaccatcggcgattattactacggccaaggt
catccgatgaagccgcaccgtatcagaatggcccacaatctcatcgtacactactaccta
cacaggcgtatggaaatcagtcgtccttttccggcgggagcggatgatatccgccgtttt
cactcgccggattatgttgacttccttgcttccgtttcaccggagactcttcatgaccat
acccattcgcgtcatctcaaaagatttaatgttggtgaggattgccctgttttcgatggg
ctttttgggttttgtcaagcttctgctggtggatctattggggctgcggttaagcttaat
cggcaggatgctgatataacgatcaactgggctggtggtctgcaccatgcaaagaaaagt
gaagcttctggtttttgctatgtgaatgatattgttcttggtattcttgagctcctcaaa
gtccacaagcgtgtgttgtacatagacattgatattcaccatggtgatggtgttgaggag
gcttttttcaccacagatagagtcatgacagtatctttccataagtttggggacttcttt
cctggtacggggcacatcaaagacattggtgcaaatcaggggaagtactatgccctaaat
gtcccattgcatgatgggatggatgacgatagtttcggtagactatttcgtcccacaata
caaaaagtcatggaggtctaccaacctgatgctgttgttcttcaatgtggggctgattca
ttggctggagacaggttgggttgcttcaacctgtctgtcaagggccatgccgcttgcctt
aggtacctcagatccttcaatgtccctctgatggttttgggtggtggaggttatactata
agaaatgtcgctaggtgctggtgctatgagacagcagttgcagttggggtagaacctgaa
aacaagttgccttacaacgagtattatgaatattttggcccagattatactcttcatgtt
gaaccaaaccccatggagaatctaaattcacctagggatctggagaagatgaggaacata
ttgcttgagcaaatctcacaattacctcatgcacctagtgtgccatttcaaaccactcct
tctacaacagaagttccagaggagaaagaggaaaatatggatcgaaggcctaaaccacgg
atatggaatggtgacggttatgagtctgatgccgatgaagacgagaaacctagacagcga
agttcagatagtaatcttactccagtagaatcatctgacatgagggatgtggacgaccaa
gccaatgcagatgacatggttgatgatcatccctag
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