KEGG   Solanum pennellii: 107024819Help
Entry
107024819         CDS       T04130                                 

Definition
(RefSeq) DNA ligase 4
  KO
K10777  
DNA ligase 4 [EC:6.5.1.1]
Organism
spen  Solanum pennellii
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spen00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    107024819
Enzymes [BR:spen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107024819
DNA repair and recombination proteins [BR:spen03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107024819
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
7
AA seq 1230 aa AA seqDB search
MATSAVDGGGNSSGGGEDIKFSVMVSLFKWIQKSKSSVKKRSKFRKFMDTFCRKPQDNFV
AMRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNF
SLVAAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRKTNAQEMKWII
MIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR
PQLALRVSNVSAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMS
DVITQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILY
VGDTSVIHRSLKERQEILQKVVKPRKGRLEILVPNGGLNAHRLSGEPCWSIIAHSVDDVD
KFFKGTVENRFVSCSSILTLLTYVPMLVAQFLVGLAEPPAPNTYPRRFISFCRVGTGVSD
EERNTIVTRLKPYFRKYEYPKQAPPTFYQVTNNAKERPDVWVESPEKSIIVSITSDIRTT
RTEVFAAPYSLRFPRIDKVRYDKPWHECLDVQSFVDLVHSTNGTTQREDNYGVEQDHESK
TIRSSRKREKKNVSAVPSHFVQTDVSRIKGETSMFSDMVFYFANVPSSHTLESLHKMVVE
HGGAFSMNLNKSVTHCIAAESRGIKFQAAKLHGDVIQCSWLFDCCLQKKLLPLQPKYFLF
LSDSTKKKMEAEVDEYSDSFYSDISIEEIKLLLRNIEHPEDSKTVEYYKKKYCPKDEWAR
FHGCCIYFFIPKQCLEYSDCKVLVELAMKRMKVEISVGGGKVGDNLFHATHVVVMSLPEI
DVKFNEVLNSFSEAEKHVLYNTKLHVVGARWLEDSLKEDQKVLEESYSLKPSNFQMSISE
KSRHDKQKGDSEKCKRPSSPDKHGGQIKEKGISDQGRAITLPKRGRKRDRGRPTGSATAK
GKVGINIPRTVKRKVTSSRAKIHENESDESATSGLSRHDKQKGDSEKCKRPSSPDKHGGQ
IKEKGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINIPRTVKRKVTSSRAKIHENE
SDESATSGEHLCNDEGEAAVGSYETTAVRSSGIQNEDVQDLELSEDGKTLPPGTAECSVI
SERLDKAHETSYGSGNIARGKDKVDEKLEDPVDPVQAMLLHMIPHLDSKPTRSIDALVKD
DKPEADTNPSLKKKKKVSYKDVAGELLKDW
NT seq 3693 nt NT seq  +upstreamnt  +downstreamnt
atggcgacttccgccgtagacggtggtggtaatagtagtggtggcggagaagacataaaa
tttagtgtaatggttagcctttttaagtggatacagaagagtaaatcatcagtgaagaag
cggtccaagttccggaagtttatggataccttctgcaggaagcctcaggacaatttcgtt
gccatgcgccttattctccctggcctcgaccgtgagcgtggctcttatggccttaaggag
cacgtcctcgctacttgcctcattgacgcacttgcaatgtcccgcgactccgatgatgca
cgccgtctccttaactggcggaaaggcggtcccaaaactggctctaatgccggcaacttc
tctcttgttgccgctgaggtcctccagcgcagacagggaatggcttctgctggtctaaca
attaaggaattaaatgacttccttgatcacttggcctcaagtgaaaatagagcagagaag
acttcaattctgtctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattata
atgataatcctcaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattc
catccagatgcagaggacttattcaatgtcacatgcgatctaaaattagtttgtgaaaag
ttgagggacagaagtcaacggcataaacgccaggatattgaagttggaaaacctgtccgc
cctcagctggctcttagggtcagcaatgtatctgctgcatggaaaaagctttacgggaaa
gaagtagttgttgagtgcaaatttgatggggatcgcatccagattcacaaaaataattct
gagctaaacttcttttcaagaaactttctggatcatcaagagtatgctcatgggatgtca
gatgttattactcagaatatccttgctgacaagtgcatactcgatggtgaaatgttggtt
tgggatgcatcaataaaccgctttgcagagttcggttccaatcaagaaatagcaaaggca
gcaagagagggtcttgatagtgataggcagttgtgttatgttgcgttcgatattctttat
gttggggataccagtgttattcatcggagcttgaaggaacgtcaagagattctccagaaa
gttgtgaagcccagaaaaggccgtttagaaattttggtccctaatggcggtcttaatgct
catcgtctttctggggagccctgttggtcgatcattgctcatagtgttgacgatgtcgat
aaattctttaaaggaactgttgagaataggtttgtttcgtgttcatctattctaactctc
ttgacctatgtaccaatgcttgtagctcaatttctggtgggtcttgctgagcctccggct
ccaaatacatatcccagaaggttcatttctttttgcagagtaggcactggagtttctgat
gaggaacgcaataccatagtaactcgattaaaaccttatttcaggaagtatgagtacccg
aagcaggcaccaccaaccttttatcaagtaacaaataatgcaaaagagcgacccgacgtg
tgggttgaaagtccagagaaatccatcattgtttcaattacaagtgatattagaacaaca
agaactgaggtgtttgctgctccatacagcttgagatttccgcgtattgataaagtcaga
tatgacaagccttggcatgagtgtcttgatgtgcaatcatttgttgatctggtacattca
accaatggtaccacgcagagggaggacaattatggggttgagcaggatcatgaatcaaag
accattaggtcgtcaagaaaacgagagaagaagaatgtctctgcagttccttctcatttt
gttcagactgacgtgtctcgaattaagggtgaaacatcaatgttctctgacatggtgttt
tattttgctaatgtgccttcatcacatacactagaatccttgcataaaatggtggtcgag
catgggggtgctttctccatgaatttgaataagtcagttactcattgtatagcagctgaa
agtagaggtatcaagtttcaagctgcaaaacttcatggagatgttattcaatgctcttgg
ctctttgactgctgtctgcaaaagaagctccttcctttacagccaaagtattttcttttc
ctttctgattcaacaaagaaaaagatggaagcagaagtggatgaatattctgattctttc
tactccgacatcagcattgaagaaattaaactgcttttgagaaatatagaacacccagaa
gactccaaaactgtcgagtactacaagaaaaagtactgtcccaaggatgaatgggctcgg
tttcatggttgctgcatttattttttcataccaaagcagtgtctggaatattcagattgc
aaggttttagtggaacttgctatgaagaggatgaaagttgaaatttctgtgggtggtggg
aaagttggtgacaatctttttcatgccacccatgtcgtcgtcatgtctctaccagagatc
gatgtaaagttcaatgaagtgttaaatagtttctcagaggctgagaaacatgttttgtac
aatacaaagctgcatgtagtcggagcacggtggttggaggattcccttaaagaggaccag
aaggtgcttgaggagagttatagccttaagcctagcaattttcaaatgtcaatctctgag
aagagtaggcatgataagcaaaaaggtgattctgaaaagtgcaaaagaccatcttcccct
gataaacatggaggacaaatcaaagaaaaaggaatttcagaccagggccgagctatcaca
ctaccaaagaggggcaggaaacgagatagaggaagacctactggtagtgctacagcaaaa
gggaaagtggggatcaacattccacgtacagttaaacgcaaggtcacaagtagtcgtgct
aagattcatgaaaatgaatctgatgaaagtgctacttcaggactcagtaggcatgataag
caaaaaggtgattctgaaaagtgcaaaagaccatcttcccctgataaacatggaggacaa
atcaaagaaaaaggaatttcagaccagggccgagctatcacactaccaaagaggggcagg
aaacgagatagaggaagacctactggtagtgctacagcaaaagggaaagtggggatcaac
attccacgtacagttaaacgcaaggtcacaagtagtcgtgctaagattcatgaaaatgaa
tctgatgaaagtgctacttcaggtgagcatctttgtaatgacgagggtgaagcggctgtt
gggagctatgaaactactgcagtacgtagctcaggaattcagaatgaggatgtacaggat
ctggaattgtctgaagatggtaaaacacttcctccggggactgccgaatgcagtgtgatc
agtgaaagattggacaaagctcacgaaacttcatatggaagtggaaatattgccaggggc
aaagacaaggtggatgaaaagctggaagaccctgttgatccagtccaagctatgctattg
catatgataccacacttggatagtaagccaacaagaagcatagacgctcttgtaaaagac
gacaagccagaggcagatactaatcccagtcttaaaaagaaaaagaaagttagctataaa
gatgtagctggtgagttgctcaaagattggtga

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