KEGG   Sphingomonas sp. MM-1: G432_04400Help
Entry
G432_04400        CDS       T02498                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphm  Sphingomonas sp. MM-1
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphm00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    G432_04400
Enzymes [BR:sphm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G432_04400
DNA repair and recombination proteins [BR:sphm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G432_04400
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(915309..917858)
Genome map
AA seq 849 aa AA seqDB search
MARAKSAVSRAAGKPRPKPKVRAAAAKGEAALDRYRAMRDFSRTAEPSGATRPASGHGFV
VQKHDATRLHYDFRLEMDGVLKSWAVTRGPSPDPADKRLAVRTEDHPLDYAHFEGTIPKG
QYGGGTVMLWDEGTWEPMPGKDPRRTLEEGHLHFILHGRRMKGEWLLVRLKPRAGEKREN
WLLRKVDDDFAGGPDDLVGQYLTSVESGRSMAEIADGAAPPKRATAKAAAGTGKAKPATM
RGRADSPPPFRPVQLATLVDHAPAGDRWLHELKYDGYRLLLAVGGGKARAYTRSGLDWSD
RFPAVVAEAAGLAVRSALIDGEAVVLDAEGRSSFQALQAALKGDPAAIIFFAFDLLTRDG
EDLTALPLLERKQRLAALIGAGGDHLHYADHVAGRGEAFFQKACKAGLEGIVSKRADAAY
AGGRSGSWVKVKCLHRQEFVLLGWTSSDRNSGFRSLLLGLNEEGGLRYAGKVGTGFDMAE
IDRLLAAMKPLETATAPVSAPRAATRGAHWIEPRLVVEVAFTEFTGDGVLRHPSYIGLRE
DKPAEAVIREEEVPVAELAERSPSPVRITNRDRVIFPDAGITKGALADYYEAIAPAMLPW
VANRPISLVRCPQGRARKCFFQKHDAGSFGDHVHHIPIREKDGGEEPYLYIEDAAGLLAC
VQMGTIEFHGWGAPIADIERPDRLVFDLDPDEGLEFGEVTAAAAHIRDELAAIGLATFAM
VTGGKGVHVVAPLRPEAEWPEVKDFARRFATALAETQPQRFTSALAKARRKGRIFVDYLR
NERGATAVMPYSARAREGAPVAAPLTWEELRALDRPAPWHVGDVDDLVRRAASRDLAGWG
RADQALPGV
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atggcgcgcgcgaaatccgccgtgtcccgcgccgcgggcaaaccccggccgaaacccaaa
gtgagggcggcggcggcgaagggcgaggcggcgctcgatcgctatcgcgcgatgcgcgat
ttcagccgcacggccgaaccttccggtgcgacgcggccggcatcggggcacggcttcgtc
gtccagaagcatgatgccacccggctccattatgatttccggctggaaatggatggcgtg
ctgaaaagctgggcggtcacgcgcggccccagccccgatccggcggacaagcggctggcg
gtgcggacggaggatcatccgctcgattacgcccatttcgaaggcaccatccccaagggc
caatatggcggcggcacggtgatgctgtgggacgagggcacgtgggagccgatgcccggc
aaggacccgcgccgcacgctcgaggaaggccatctccatttcatcctccatggccgccgg
atgaagggggaatggctgctcgtccgcctcaagccccgcgccggggaaaagcgcgagaac
tggctgctccgcaaggtggacgatgatttcgcgggcgggccggacgatctggtcggccaa
tatctcaccagcgtggaaagcgggcgcagcatggccgagatcgccgatggcgcggccccg
ccgaagcgggccaccgcgaaggcggcggccgggacggggaaggcgaagcccgccacgatg
cggggccgcgcggattcgcctccgcccttccggccggtgcagcttgccacgctggtcgat
catgcgcccgccggcgaccgttggctgcatgagctgaaatatgacggctatcgcctgctg
ctggcggtgggcggcggcaaggcgcgggcctatacccgctccggcctcgactggtcggat
cgctttcccgctgtcgtcgccgaggccgccggccttgccgtccgttccgcgctgatcgac
ggcgaggcggtggtgctggatgcggaagggcggtccagcttccaggcgctccaggccgcg
ctcaagggcgatccggcggcgatcatcttcttcgccttcgatctcctcacccgcgatggc
gaggatctgacggcgttgccgctcctcgagcgcaagcagcggctggcggcgctgatcggg
gcgggcggcgatcatctgcattatgccgatcatgtcgccggccggggcgaggcctttttc
cagaaggcgtgcaaggcggggctggagggcatcgtctcgaaacgggcggacgcggcctat
gccggcgggcgatccggcagctgggtgaaggtgaagtgcctccaccgccaggaattcgtg
ctgctgggctggacctcgtcggacaggaacagcggcttccgatccctgctcctcggcctc
aacgaggagggcgggctgcgttacgccggcaaggtcggcaccggcttcgacatggccgag
atcgatcgcctgctcgccgcgatgaagccgctcgaaaccgccacggccccggtctccgcc
ccccgtgccgcgacccgcggcgcccattggatcgaaccccggctggtcgtggaggtcgcc
ttcaccgaattcacgggcgacggcgttctccgccacccgagctatatcggcctgcgcgag
gacaagcccgccgaagccgtcatccgggaggaggaagtgcccgtggccgagcttgccgaa
cgatcgcccagccccgtgcggatcaccaatcgcgatcgggtgatcttccccgatgccgga
atcaccaagggcgcgctcgccgattattatgaggcgatcgcgccggcgatgctgccctgg
gttgcgaaccggccgatcagccttgtccgctgcccgcagggccgggcgcgaaaatgcttc
ttccagaaacatgatgccggcagcttcggcgatcatgtccaccacatccccatccgcgag
aaggacggcggggaggagccctatctctatatcgaggatgccgccggcctgctcgcctgc
gtgcagatgggcacgatcgaattccacggctggggcgccccgatcgccgatatcgagcgg
ccggaccggctggtcttcgatctcgacccggacgaggggctggaattcggcgaggtcacg
gccgccgccgcccatatccgcgacgagcttgccgccatcggcctggcgaccttcgcgatg
gtcacgggcggaaagggcgtccatgtcgtggcgccgctgcggccggaagcggaatggccg
gaggtcaaggatttcgcccgccgcttcgcgacagcgctggcggagacccagccccagcgc
ttcacctcggccttggccaaggcgcggcggaaggggcgcatcttcgtcgattatctgcgc
aacgagcggggtgcgacggcggtgatgccctattccgccagggcgagggagggcgccccg
gtcgcagcgcccctgacctgggaggaattgcgcgcgctggacaggcccgcgccctggcat
gtcggcgatgtggacgatctggttcgccgcgcggcctcccgcgatctggcgggctggggc
agggccgatcaggcgctgcccggcgtgtga

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