KEGG   Sphingomonas sp. MM-1: G432_17380
Entry
G432_17380        CDS       T02498                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sphm  Sphingomonas sp. MM-1
Pathway
sphm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sphm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    G432_17380 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphm03021]
    G432_17380 (rpoB)
   03400 DNA repair and recombination proteins [BR:sphm03400]
    G432_17380 (rpoB)
Enzymes [BR:sphm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     G432_17380 (rpoB)
Transcription machinery [BR:sphm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     G432_17380 (rpoB)
DNA repair and recombination proteins [BR:sphm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      G432_17380 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AGH51194
UniProt: M4S9K6
LinkDB
Position
complement(3694099..3698253)
AA seq 1384 aa
MATQAASGQALINTAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPEDAYVSGLE
KTLRSVFPIRDFAGTAELDFVNYELEPPKYDVDECRQRGITYAAPMRVTLRLIVFEVDPD
TETRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHASG
KYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNGEEILNHFYGRL
TWVRGEGGWKVPYTPENWRGQKPNFDVVNADTGEVVFTAGTKISPRAANKAGKDGLTMLL
IPTDEIYGKYSAYDLIDERTGRIWIEAGDEVTPENLELLDQAGLEKLELLDIDHVSTGPW
IRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLN
MRLDLDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRV
GLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTH
KRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGF
IETPYRKVVDNKVTNEVVYLSAMEEAKHTIAQANAELDAEGRFVEELVSSRQAGEFLIAP
RDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEE
TVARDSGAAIGARRSGIVDQVDATRIVIRATEEVEAGKSGVDIYTLMKFQRSNQSTCINQ
RPLVKVGDVVRKGDVIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDV
FTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMA
IEREEIDRLRKDAEDERGILNRATFARLREMLLGQVATAAPKGVKKGVEIDAEVLDSVER
HEWWKFAVQDDARQADLEAVKAQYDDAAGVIKARFEDRVEKLQRGDELPPGVLKMVKVFV
AVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDLVLNPLGVPSRMNVGQIFE
THLGWAARGLGKQVTEALEAWREANPNPEAAAPPAAVVERLKTIYGNQYHAEIDARSPDQ
IVEMAKVLKNGVPMATPVFDGAREADVSAMLTMAGYDTSGQVELYDGRTGEAFDRRVTVG
YIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQ
EMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSIEDDGLA
EAAE
NT seq 4155 nt   +upstreamnt  +downstreamnt
atggcgacccaggcggcatccggccaggccctcatcaacaccgcgaagaagcgcatccgc
aaggttttcggcaacatccacgaagtggtgcagatgccgaacctgatcgaggtgcagcgc
gaaagctacgaacagttcctgcgctcccgccccgaggacgcttatgtctccggcctggaa
aagacgctgcgctccgtcttcccgatccgcgatttcgccggcaccgccgaactcgacttc
gtgaactacgaactcgagccgccgaaatatgacgtggacgagtgccgccagcgcggcatc
acctatgcggcgccgatgcgcgtcacgctgcgcctgatcgtgttcgaggtggaccccgat
acggaaacccgctccgtgctcgatatcaaggagcaggacgtctacatgggcgacatgccg
ctgatgacggagaacggcacgttcttcgtcaacggcaccgagcgcgtgatcgtttcgcag
atgcaccgttcgccgggcgtgctgttcgatcatgatcgcggcaagacgcacgcttcgggc
aagtatctcttcgccgcccgcgtcatcccctatcgtggctcgtggctcgatttcgagttc
gatgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcacgacc
ctgctctatgcgctgggcctgaacggcgaggaaatcctcaaccatttctacggccgcctc
acctgggtccgtggcgagggcggctggaaggtgccctacaccccggagaactggcgcggc
cagaagccgaatttcgacgtggtgaacgccgataccggcgaggtcgtgttcacggccggc
accaagatcagcccccgcgccgccaacaaggccggcaaggacggcctgaccatgctgctg
atcccgaccgacgagatctatggcaaatattcggcctatgacctgatcgacgagcggacc
ggccgcatctggatcgaggccggcgacgaagtgacgccggaaaatctggagctgctcgac
caggccgggctcgagaagctcgagcttctcgacatcgaccatgtctcgaccggtccgtgg
atccgcaacacgctgaaggccgacaaggtcgaggaccgcgatcacgcgctgtccgaaatc
taccgcgtcatgcgccccggcgaaccgccgacgaaggaaaccgccgaagcgctgttcgcc
ggcctgttctttgatcccgagcgctatgatctctcggccgtgggccgcgtgaagctcaac
atgcgcctcgacctcgacgccgaggatacggtgacgacgctgcgcagcgaggacatcctc
gccgtggtgaagacgcttgtcgacctgaaggacggcaagggcgagatcgacgacatcgac
aatctcggcaaccgccgcgtgcgttcggtgggcgagctgctggagaaccagtatcgcgtc
ggcctgctccgcatggagcgcgccgtgaaggagcgcatgtcctcggtcgacgtgtcgacc
gtcatgccgaacgacctgatcaacgcgaagccggcggtcgccgccgtgcgcgagttcttc
ggctcctcgcagctctcgcagttcatggaccagaccaacccgctgtcggaagtgacgcac
aagcgccgcgtctccgccctcgggccgggcggtctcacccgcgagcgcgcgggcttcgag
gtgcgcgacgtgcacccgacgcactatggccgcatctgcccgatcgaaacgccggaaggc
ccgaacatcggcctgatcaactcgctggcctcgttcagccgcgtcaacaagtacggcttc
atcgagacgccgtatcgcaaggtcgtggacaacaaggtcaccaacgaggtggtctacctc
tccgccatggaagaggccaagcacacgatcgcccaggcgaacgcggagttggatgctgag
ggccgcttcgtcgaggaactcgtctcctcccgccaggccggcgagttcctgatcgccccg
cgcgaccagatcacgctgatggacgtgagcccgaagcagctcgtgtcggtcgccgcctcg
ctgattccgttcctggaaaatgacgacgccaaccgcgcgctcatgggatcgaacatgcag
cgccaggccgtgccgctcgtccgcgccgaggcgccgttcgtcggcaccggcatggaagag
acggtggcgcgggattcgggtgccgccatcggcgcccgccgctccggcatcgtcgaccag
gtggacgcgacccgcatcgtcatccgcgcgaccgaggaggtcgaggccggcaagtcgggc
gtcgacatctacacgctgatgaagttccagcgctccaaccagtcgacctgcatcaaccag
cgtccgctggtgaaggtgggcgatgtcgtccgcaagggcgacgtgatcgccgacggcccg
tcgaccgagttcggcgagctggcgctgggccgcaacgcgctcgtcgcgttcatgccctgg
aacggctacaactacgaggactcgatcctcatcagcgaacggatcgtgaaggacgacgtg
ttcacgtcgatccacatcgacgagttcgaggtgatggcccgcgacaccaagctggggccg
gaggacatcacccgcgacatcccgaacgtcggtgaagaagcgctgcgcaacctcgacgag
gccggcatcgtctacatcggcgccgaggtggagccgggcgacatcctggtcggcaagatc
acgccgaagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggc
gaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggcgtggccggcacg
atcgtcgacgtccgcgtgttcaaccgccacggcatcgacaaggacgagcgcgcgatggcg
atcgagcgcgaggagatcgatcgcctgcgcaaggacgccgaggacgaacgcggcatcctg
aaccgcgcgaccttcgcgcggcttcgcgaaatgctgctgggccaggtggccacggcggcg
cccaagggcgtgaagaagggcgtggagatcgacgccgaggtgctggattcggtcgagcgc
cacgaatggtggaagttcgccgtgcaggacgacgcccgccaggccgatctggaagccgtg
aaggcgcagtatgacgacgccgccggcgtcatcaaggcgcgcttcgaggaccgggtcgag
aagctgcagcgcggcgacgagctgccgccgggcgtgctgaagatggtcaaggtgttcgtc
gcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggc
gtcatcagccgcatcctgccggtcgaggacatgccgttcctggaggacggcaccccggtc
gatctcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtcggccagatcttcgag
acccatctcggctgggccgcgcgcggcctgggcaagcaggtgaccgaggcgctggaagcg
tggcgcgaagccaatcccaacccggaggcggcggccccgccggccgcggtggtggaacgg
ctgaagacgatctacggcaatcaatatcatgccgagatcgacgcccgcagccccgaccag
atcgtcgagatggcgaaggtgctgaagaatggcgtgccgatggcgacgccggtgttcgac
ggcgcccgcgaggcggacgtgtcggcgatgctgaccatggcgggttacgacacgtcgggt
caggtggagctgtatgacggccgcaccggcgaggcgttcgatcgccgcgtcaccgtgggc
tacatctacatgctgaagctccaccacctggtcgacgacaagatccacgcgcgttcgatc
gggccgtacagcctcgtcacccagcagccgctgggcggcaaggcccagttcggcggccag
cgcttcggtgaaatggaagtgtgggcgctccaggcctatggcgccgcctacacgctccag
gaaatgctgacggtgaagtccgacgacgtggtcggccgcaccaaggtctatgaagcgatc
gtcaagggcgacgataccttcgaggccggcatcccggagagcttcaacgtgctcgtcaag
gaaatgcggtcgctgggcctcaacgtcgaactcaagagcatcgaggacgacggcctggcc
gaggcggcggaataa

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