Sphingomonas sp. MM-1: G432_17380
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Entry
G432_17380 CDS
T02498
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G432_17380 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphm03021
]
G432_17380 (rpoB)
03400 DNA repair and recombination proteins [BR:
sphm03400
]
G432_17380 (rpoB)
Enzymes [BR:
sphm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G432_17380 (rpoB)
Transcription machinery [BR:
sphm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G432_17380 (rpoB)
DNA repair and recombination proteins [BR:
sphm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G432_17380 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGH51194
UniProt:
M4S9K6
LinkDB
All DBs
Position
complement(3694099..3698253)
Genome browser
AA seq
1384 aa
AA seq
DB search
MATQAASGQALINTAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPEDAYVSGLE
KTLRSVFPIRDFAGTAELDFVNYELEPPKYDVDECRQRGITYAAPMRVTLRLIVFEVDPD
TETRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHASG
KYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNGEEILNHFYGRL
TWVRGEGGWKVPYTPENWRGQKPNFDVVNADTGEVVFTAGTKISPRAANKAGKDGLTMLL
IPTDEIYGKYSAYDLIDERTGRIWIEAGDEVTPENLELLDQAGLEKLELLDIDHVSTGPW
IRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLN
MRLDLDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRV
GLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTH
KRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGF
IETPYRKVVDNKVTNEVVYLSAMEEAKHTIAQANAELDAEGRFVEELVSSRQAGEFLIAP
RDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEE
TVARDSGAAIGARRSGIVDQVDATRIVIRATEEVEAGKSGVDIYTLMKFQRSNQSTCINQ
RPLVKVGDVVRKGDVIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDV
FTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMA
IEREEIDRLRKDAEDERGILNRATFARLREMLLGQVATAAPKGVKKGVEIDAEVLDSVER
HEWWKFAVQDDARQADLEAVKAQYDDAAGVIKARFEDRVEKLQRGDELPPGVLKMVKVFV
AVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDLVLNPLGVPSRMNVGQIFE
THLGWAARGLGKQVTEALEAWREANPNPEAAAPPAAVVERLKTIYGNQYHAEIDARSPDQ
IVEMAKVLKNGVPMATPVFDGAREADVSAMLTMAGYDTSGQVELYDGRTGEAFDRRVTVG
YIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQ
EMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSIEDDGLA
EAAE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccaggcggcatccggccaggccctcatcaacaccgcgaagaagcgcatccgc
aaggttttcggcaacatccacgaagtggtgcagatgccgaacctgatcgaggtgcagcgc
gaaagctacgaacagttcctgcgctcccgccccgaggacgcttatgtctccggcctggaa
aagacgctgcgctccgtcttcccgatccgcgatttcgccggcaccgccgaactcgacttc
gtgaactacgaactcgagccgccgaaatatgacgtggacgagtgccgccagcgcggcatc
acctatgcggcgccgatgcgcgtcacgctgcgcctgatcgtgttcgaggtggaccccgat
acggaaacccgctccgtgctcgatatcaaggagcaggacgtctacatgggcgacatgccg
ctgatgacggagaacggcacgttcttcgtcaacggcaccgagcgcgtgatcgtttcgcag
atgcaccgttcgccgggcgtgctgttcgatcatgatcgcggcaagacgcacgcttcgggc
aagtatctcttcgccgcccgcgtcatcccctatcgtggctcgtggctcgatttcgagttc
gatgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcacgacc
ctgctctatgcgctgggcctgaacggcgaggaaatcctcaaccatttctacggccgcctc
acctgggtccgtggcgagggcggctggaaggtgccctacaccccggagaactggcgcggc
cagaagccgaatttcgacgtggtgaacgccgataccggcgaggtcgtgttcacggccggc
accaagatcagcccccgcgccgccaacaaggccggcaaggacggcctgaccatgctgctg
atcccgaccgacgagatctatggcaaatattcggcctatgacctgatcgacgagcggacc
ggccgcatctggatcgaggccggcgacgaagtgacgccggaaaatctggagctgctcgac
caggccgggctcgagaagctcgagcttctcgacatcgaccatgtctcgaccggtccgtgg
atccgcaacacgctgaaggccgacaaggtcgaggaccgcgatcacgcgctgtccgaaatc
taccgcgtcatgcgccccggcgaaccgccgacgaaggaaaccgccgaagcgctgttcgcc
ggcctgttctttgatcccgagcgctatgatctctcggccgtgggccgcgtgaagctcaac
atgcgcctcgacctcgacgccgaggatacggtgacgacgctgcgcagcgaggacatcctc
gccgtggtgaagacgcttgtcgacctgaaggacggcaagggcgagatcgacgacatcgac
aatctcggcaaccgccgcgtgcgttcggtgggcgagctgctggagaaccagtatcgcgtc
ggcctgctccgcatggagcgcgccgtgaaggagcgcatgtcctcggtcgacgtgtcgacc
gtcatgccgaacgacctgatcaacgcgaagccggcggtcgccgccgtgcgcgagttcttc
ggctcctcgcagctctcgcagttcatggaccagaccaacccgctgtcggaagtgacgcac
aagcgccgcgtctccgccctcgggccgggcggtctcacccgcgagcgcgcgggcttcgag
gtgcgcgacgtgcacccgacgcactatggccgcatctgcccgatcgaaacgccggaaggc
ccgaacatcggcctgatcaactcgctggcctcgttcagccgcgtcaacaagtacggcttc
atcgagacgccgtatcgcaaggtcgtggacaacaaggtcaccaacgaggtggtctacctc
tccgccatggaagaggccaagcacacgatcgcccaggcgaacgcggagttggatgctgag
ggccgcttcgtcgaggaactcgtctcctcccgccaggccggcgagttcctgatcgccccg
cgcgaccagatcacgctgatggacgtgagcccgaagcagctcgtgtcggtcgccgcctcg
ctgattccgttcctggaaaatgacgacgccaaccgcgcgctcatgggatcgaacatgcag
cgccaggccgtgccgctcgtccgcgccgaggcgccgttcgtcggcaccggcatggaagag
acggtggcgcgggattcgggtgccgccatcggcgcccgccgctccggcatcgtcgaccag
gtggacgcgacccgcatcgtcatccgcgcgaccgaggaggtcgaggccggcaagtcgggc
gtcgacatctacacgctgatgaagttccagcgctccaaccagtcgacctgcatcaaccag
cgtccgctggtgaaggtgggcgatgtcgtccgcaagggcgacgtgatcgccgacggcccg
tcgaccgagttcggcgagctggcgctgggccgcaacgcgctcgtcgcgttcatgccctgg
aacggctacaactacgaggactcgatcctcatcagcgaacggatcgtgaaggacgacgtg
ttcacgtcgatccacatcgacgagttcgaggtgatggcccgcgacaccaagctggggccg
gaggacatcacccgcgacatcccgaacgtcggtgaagaagcgctgcgcaacctcgacgag
gccggcatcgtctacatcggcgccgaggtggagccgggcgacatcctggtcggcaagatc
acgccgaagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggc
gaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggcgtggccggcacg
atcgtcgacgtccgcgtgttcaaccgccacggcatcgacaaggacgagcgcgcgatggcg
atcgagcgcgaggagatcgatcgcctgcgcaaggacgccgaggacgaacgcggcatcctg
aaccgcgcgaccttcgcgcggcttcgcgaaatgctgctgggccaggtggccacggcggcg
cccaagggcgtgaagaagggcgtggagatcgacgccgaggtgctggattcggtcgagcgc
cacgaatggtggaagttcgccgtgcaggacgacgcccgccaggccgatctggaagccgtg
aaggcgcagtatgacgacgccgccggcgtcatcaaggcgcgcttcgaggaccgggtcgag
aagctgcagcgcggcgacgagctgccgccgggcgtgctgaagatggtcaaggtgttcgtc
gcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggc
gtcatcagccgcatcctgccggtcgaggacatgccgttcctggaggacggcaccccggtc
gatctcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtcggccagatcttcgag
acccatctcggctgggccgcgcgcggcctgggcaagcaggtgaccgaggcgctggaagcg
tggcgcgaagccaatcccaacccggaggcggcggccccgccggccgcggtggtggaacgg
ctgaagacgatctacggcaatcaatatcatgccgagatcgacgcccgcagccccgaccag
atcgtcgagatggcgaaggtgctgaagaatggcgtgccgatggcgacgccggtgttcgac
ggcgcccgcgaggcggacgtgtcggcgatgctgaccatggcgggttacgacacgtcgggt
caggtggagctgtatgacggccgcaccggcgaggcgttcgatcgccgcgtcaccgtgggc
tacatctacatgctgaagctccaccacctggtcgacgacaagatccacgcgcgttcgatc
gggccgtacagcctcgtcacccagcagccgctgggcggcaaggcccagttcggcggccag
cgcttcggtgaaatggaagtgtgggcgctccaggcctatggcgccgcctacacgctccag
gaaatgctgacggtgaagtccgacgacgtggtcggccgcaccaaggtctatgaagcgatc
gtcaagggcgacgataccttcgaggccggcatcccggagagcttcaacgtgctcgtcaag
gaaatgcggtcgctgggcctcaacgtcgaactcaagagcatcgaggacgacggcctggcc
gaggcggcggaataa
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integrated database retrieval system