Sphingobium sp. TKS: K426_19480
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Entry
K426_19480 CDS
T04965
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spht
Sphingobium sp. TKS
Pathway
spht03410
Base excision repair
spht03430
Mismatch repair
spht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K426_19480
03430 Mismatch repair
K426_19480
03440 Homologous recombination
K426_19480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spht03400
]
K426_19480
DNA repair and recombination proteins [BR:
spht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K426_19480
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K426_19480
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K426_19480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AMK24825
UniProt:
A0A126RTA2
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Position
1:complement(3931578..3933344)
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AA seq
588 aa
AA seq
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MTIALNITRSIVGQPWRWRGGNGDGRDPGYRPDDLVTQLLLARGCPRDAVEAHRNPTIRH
FMPDPSLFRDMDAAAERLADAVVRGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPYI
PDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFEALAMAKAAGVDVVVVDHHKCGAS
LPEALALVNPNRLDEATEAAAHGHLAAVGVAFLLGAALIRVLRGRGWFAQRSEPPLMELL
DIVALGTVADVAQLKGLNRAFVAQGLKIMAKRRNIGLSALIDASRLTRAPLCHDLGFALG
PRINAGGRVGKADLGVRLLTTEDPAEAAKIAAELDQLNEERRAIEAAVQAEAEELLAAQG
NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDENGTGKGSGRSISGVDLGAAVL
AAKDSGLLVAGGGHAMAAGLTVAADRIDALAEFLDERLANAVAKARDDRALLIDAVLAPA
GVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSIKTIAF
RQAESDLGQAILGAPRDRRLWIAGRAKIDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccattgcgctcaacatcacccgttcgatcgtcggtcagccctggcggtggcgtgga
ggcaatggggacgggcgcgatccgggctatcggcccgacgatctggtgacgcaattgctg
ttggcgcggggttgtccgcgcgacgcggtagaggcgcatcgcaatcccaccatccgtcat
ttcatgcccgaccccagcctgttccgcgacatggacgccgccgccgaacgcttggccgac
gcggtggtgcgcggggaggatgtccgcatcttcggtgattatgacgtggacggcgcgacc
agcgccgcgctgctgatccgcttgctgcgcgatcttgggctggctgcccgcccctatatt
cccgaccggctgatggagggctatggcccatcaggcgaagcgctggtccggctggcggga
gagggcgccacactgatcgtcaccgtcgattgcggcgcgcaggctttcgaggcgcttgcc
atggcgaaggcggcaggcgtcgatgtggtagtggtcgaccatcataaatgtggcgcgtcg
ctgcccgaagcgctggcgctggtgaaccccaatcgtcttgacgaagcgacagaagccgcc
gctcatggccatctggcggcggtgggcgtggcgttcctgctcggcgcggcgctgatccgg
gtgttgcgcgggcgcggctggttcgcccagcgatccgaaccgccgctgatggaactgctc
gacatcgttgcgcttgggacggtcgcggatgtggcgcaactcaagggtctcaaccgcgcc
ttcgtcgcgcagggtctcaagatcatggcgaagcggcgtaatatcggcctctccgcgctg
atcgacgccagccgcctgacgcgggcgccgctctgccatgatctgggctttgcactcggc
ccgcgcatcaatgcgggcgggcgcgtgggcaaggcggatctgggcgtgcggctgctgacc
accgaagacccggcggaggccgcgaagatcgccgccgaactcgaccagctcaatgaagaa
cgccgcgccatagaggccgccgttcaggctgaggcggaggaactgctcgccgcgcaaggc
aatcgggcggtggcgctggtatcgggcgcgggctggcatccgggcgtgatcggcatcgtc
gccgggcgcatcaaggagaaagcgggccgcccagccatcgtcgtcgcgatcgatgagaat
ggcaccggcaagggatcgggccgctcgatctccggcgttgatctgggcgcggcggtgctg
gcagcgaaagacagcggcctgctggtcgcgggcggtggccatgccatggcggcggggctg
acggttgcggcggacaggatcgatgcgctggccgaatttctggatgagcggcttgccaac
gcagtggccaaggctcgcgacgaccgggcgctgctgatcgacgcggtcctggcgcctgcg
ggggtcaatccggacttcgtcgccgccatcgacgcgggcggcccctatggcgcgggctgg
cctgcgccgttgatcgcttccgggccaatgcgggtcatcaaggcggatgtcgtcggcaat
ggtcatttgcgtgcgatcatggcgggcgacgacggccgctcgatcaagaccatcgctttc
cgccaggccgaatccgatctcggccaggccattctgggcgcgccccgcgaccggcggctg
tggattgcgggccgggcgaagatcgacgattgggggtcgcgcccggctgccgaactgcat
ctggaggatgccgcctgggccgattga
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