KEGG   Sphingomonas sp. LK11: AV944_04690Help
Entry
AV944_04690       CDS       T04954                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:splk00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AV944_04690
Enzymes [BR:splk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AV944_04690
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AV944_04690
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APX65258
UniProt: A0A1P8PRV3
LinkDB All DBs
Position
complement(980523..982973)
Genome map
AA seq 816 aa AA seqDB search
MADPLERYNAKRDFTRTAEPAGTLAPGQGNSFIVQKHDATRLHWDFRLEVDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYATFEGTIPAGEYGGGTVMLWDRGTWSPVAGKSAKDLE
DGHLHFILDGERMKGEWLLVRMKPRGKEKRENWLLRKVADAQAGGTDTLTDQALTSVSTG
RTMAQIAEGKAAKPKSAKAAKARPGSAKAKAEAKAGTMPEFQPPALCTLVDQVPAGNGWL
HEIKYDGYRALIAVGGGEARVFTRSGLDWSEKFPGIVAAAADLPVTSALIDGEIVAFEDG
RPDFSTLKDAIGTAKPMSLFAFDLLSLDGEDVTGLPLVQRKERLRGIVPKGDGTIQFAEH
VTGSGEALFDKLCAEGLEGVVSKRADSRYPNARSRDWLKIKCLKRQEFVIVGWLPSDKAR
RGLKSLLLGVNRDGKLAYVGKVGTGFTQDRMAELRTLLDARPRKTAPVEAPRAMVRGAKW
VRPDLVAEIAFTETTPDGLLRHPSFIGLREDKPADQVVEERPAPAPSAEESDIAITHPER
VIFPDGDLTKGNLADYVAAVAPLMLPWVARRPVSLVRCPQGRARACFFQKHDAGSFGPHV
HSVPIQEKDGGTEPYLYIEDAEGLRACIQMGSIEFHGWGSSIATLEQPDRMIFDLDPDPS
VTFDDVKRAAVHIHDQLAELGLTSFAMLSGGKGVHVVVPLTPNAEWPAVSDFAERFAKAL
AESDPDRFVAVATKARRKGRIFIDWLRNQRGATAVMPYSARARSGAPVAAPVAWRELDGI
DTAARWTIRDAGELATRAGSAALRGWGVADQILPDL
NT seq 2451 nt NT seq  +upstreamnt  +downstreamnt
atggctgatccgctcgaacgctataacgccaagcgcgacttcacccgcaccgccgaaccg
gcggggacgctggcgccgggccagggcaacagcttcatcgtgcagaagcatgacgcgacc
cggctccactgggacttccggctggaggtggacggggtgctcaaaagctgggcggtcacg
cgcgggccgagcctggaccctgacgaaaagcggctggcggtacggaccgaggatcatccg
ctatcctatgcgacgttcgaggggaccatcccggcgggcgaatatggcggcggcacggtg
atgctgtgggatcgcggcacctggtcgccggtcgcgggcaagagcgcgaaggatctggag
gacgggcatctccacttcatcctcgatggcgagcggatgaagggcgaatggctgctcgtc
cgcatgaagccacggggcaaggagaagcgcgagaactggctgctgcgcaaggttgccgac
gcccaggccgggggcaccgacacgctgaccgatcaggcgctgaccagcgtgtcgaccgga
cggactatggcgcagatcgccgaagggaaagcggcgaagccaaagtccgccaaggcagcg
aaggcgcggccgggcagtgcgaaagcgaaggccgaggcgaaagcgggcacgatgcccgaa
tttcagcccccggcgctctgcactttggtcgatcaggtccccgccggaaatggctggctg
catgagatcaaatatgacggctaccgcgcgctgatcgcggtcggcgggggcgaggcgcgg
gtcttcacccgcagcgggctggactggagcgagaaattccccggcatcgtggcggccgcc
gccgacctgcccgtcaccagcgcgctgatcgacggagagatcgtcgcgttcgaggacggc
cgtcccgacttctcgacgctgaaggatgcgatcggcacggccaagccgatgagcctgttc
gccttcgacctcctctcactggacggcgaggatgtgaccggcctgccgctggtccagcgc
aaggaacggttgcgcggcatcgtgcccaagggcgacgggacgatccagttcgccgaacac
gtcaccggctcgggcgaggcgctgttcgacaaactgtgtgccgaggggctggaaggcgtc
gtctccaaacgcgccgacagccgctatcccaatgcgcgcagccgcgactggctgaagatc
aaatgcctgaagcggcaggagttcgtgatcgtcggctggctgccgtccgacaaggcgcgg
cgggggttgaagtcgctgctgctgggggtgaaccgcgacggcaagctggcctatgtcggc
aaggtcggcaccggctttacgcaagaccgcatggccgagttgcgcaccttgctcgacgcc
cgcccccgcaagaccgcccccgtcgaggcgccgcgcgcgatggtacgcggcgcgaaatgg
gtgcgccccgatctggtcgccgagatcgcctttaccgagacgacgcccgacggcctgctc
cgccaccccagcttcatcggccttcgcgaggacaagcctgccgatcaggtggtcgaggaa
cgccccgcccccgcgccttcggccgaggagagcgatatcgccatcacccatcccgaacgg
gtgatctttcccgacggcgacctgaccaagggcaatctcgccgattatgtcgcggcggtc
gccccgctgatgctgccctgggtcgcgcgccgaccggtcagcctggtccgctgtccgcag
gggcgggcgcgggcatgcttcttccagaagcatgacgcgggcagtttcggaccgcatgtc
cattcggtgccgatccaggaaaaggacggcggcaccgaaccctatctctatatcgaggat
gcggagggcctgcgcgcctgtatccagatgggctcgatcgagtttcacggctggggctcc
tccatcgccacgctggaacagcccgaccggatgatcttcgacctcgaccccgacccgtcc
gtgaccttcgacgatgtgaaacgcgccgccgtgcatatccatgaccagctcgccgaactg
ggcctgaccagctttgccatgctgtcgggcggcaaaggggtgcatgtcgtcgtaccgctg
accccgaacgccgaatggcccgccgtgtcggatttcgccgaacgcttcgccaaggcactg
gcagagagcgatcccgaccgcttcgtcgcggtggcgaccaaggccaggcgcaagggccga
atcttcatcgactggctgcgcaaccagcgcggggcgaccgccgtcatgccctattcggcg
cgggcgagatcgggcgcgccggtcgcggccccggtggcgtggcgcgagctggacggcatc
gatacggcggcgcgctggacgatccgcgatgccggggaactggcgacgcgcgcgggcagc
gcggcgttgcgcggctggggtgtggcggatcaaatcctgcccgatctctaa

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