KEGG   Strongylocentrotus purpuratus (purple sea urchin): 582203Help
Entry
582203            CDS       T01019                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  
DNA ligase 4 [EC:6.5.1.1]
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spu00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    582203 (lig4)
Enzymes [BR:spu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     582203 (lig4)
DNA repair and recombination proteins [BR:spu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     582203 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
Un
AA seq 930 aa AA seqDB search
MASADQQPTSCTSTGASTEPEGPTVASQIPFVQLCGFLERVQKKKGSDAKKLLFKEFLEK
WREFHKAMHAKNPNTTDNFYPAMRLLLPQLERERMAYGIKEHTLAKFYIDIFGLAKESTD
AKKLLNYRAPTAKQEAGDFASVAFFVLRNRCPERGSLTIKDVNDSLDSIALNNATKKKDL
VKQSLLKLLRKTSAIEQKWFIRMIMKEMKVGLSQQSILGTFHPDAEDLFNVTNSLSKVCS
DLSSPSVRLNEIAISVFSPFSPMLGERAKITGVERMMEHKGFLIETKLDGERMQLHKEGD
KYMYFSRRSHDYSGSFGKSPMEGSLTPYIANCFNRDVHSCILDGEMCAYNSETKAFISKG
ENFDIKSLRDEEDVQVCYAVFDVLLVNDTKLANRPLKERLNYLPKVFTVIEGRMVLVERR
DASTKAEVVEALNEAIDKREEGIVVKHPESTYRPDKRKGSGWLKIKPEYVDNLMDELDLL
IVGGYFGKGYRSQLISHFLCALAVPPSREGDHPKIFYSFCKVGSGYTLQELLDFNQKLAK
HWKKYDKENPPRWLQCTREKPELYVEPQHSFIVQVKATEINSSNVYRTGCTLRFPRLEKV
RDDKDWHQCMTTEEMENMRQQAEGKLTGRHVNVDDDEIVTTKRRKATSRAVIPVAVPSRF
RAADTSNVKQTSEMLEGRELCIMNSPASHPKDQLEKKIVECGGLVVQNPGIDTYCVLADK
VNLKVKNIFSAKIYDVVKTSWLIESLDAGRLLPWLPSHMLFTSAKMTAQFALDYDCHGDS
YTQDVNEEKLREVFANVEKKKSKQPMTAEQIAEIEMDYFPQDSLLGLFRLCRVYMDSCLV
IGEEDTHIKDCSLDLVSLEMRFHGATMCPMLDRQVTHIIVDKSDLSRVREFRLRGQKRAL
KQHVVTSEWVRDCIQKEKFLSERPYEAAMS
NT seq 2793 nt NT seq  +upstreamnt  +downstreamnt
atggctagtgccgaccagcaacccacttcatgcacttctacaggagctagcacagagcca
gaggggccaaccgttgcaagccagatcccttttgtacagctttgtgggttcctagagaga
gtccagaagaagaaggggagcgatgcaaagaaactactcttcaaggaattcttagaaaaa
tggagagaattccacaaagcgatgcatgccaagaacccaaacacgacagataatttctat
ccagcaatgcgactactgttaccccaacttgagagagagagaatggcttatggcatcaaa
gagcacaccctagctaaattctatattgacatctttggtttagccaaagaaagcacggat
gccaagaaacttctaaactacagggctccaacagctaaacaggaagctggagactttgct
agtgttgctttctttgtcctgcgtaatagatgcccagagagaggaagcttgaccattaag
gatgtgaatgacagtcttgactctatcgctctcaacaatgctaccaagaagaaagacctg
gtcaagcaaagtttgttgaagttactcaggaaaaccagcgctatagaacaaaagtggttc
atacgtatgattatgaaggaaatgaaagttggtctcagtcagcagtctattcttggaacc
ttccatcctgatgcagaagacttgttcaatgttaccaacagtctctcaaaggtttgcagt
gatctgtctagcccgagtgtgagattgaatgagattgccatcagcgtgttcagtcctttc
agccctatgctgggtgaaagagccaaaataactggggttgagcgtatgatggagcacaaa
ggtttcctgattgaaaccaaactagatggagagagaatgcagcttcataaagaaggagac
aagtacatgtatttctcaagaaggtctcatgactattctggatcctttggtaagagccca
atggaagggagcttgacaccatacattgcaaactgcttcaatagagatgttcattcctgc
atattggatggtgagatgtgtgcctataattcagagaccaaagctttcatctcaaaggga
gaaaactttgacatcaaaagcctacgagatgaagaagatgttcaggtttgttatgctgtg
tttgatgtcctccttgtgaatgataccaaacttgcaaaccgccctctcaaggagagactc
aactacttaccaaaagtgtttactgtaattgaaggaagaatggtcttggtggaaaggaga
gatgcatctacaaaggcagaggttgtagaggcattgaatgaggctatagataaaagagaa
gaaggaatcgtcgttaagcatccagagtcaacttatcgacctgacaagagaaaaggtagt
ggttggttgaagatcaaacccgagtatgtcgacaatctgatggatgagttggaccttctt
atagtcggaggctactttggcaaagggtatcggtcgcagctcatctcacatttcctctgc
gcactagctgttcctccaagcagggaaggagaccatcccaagatcttttactccttttgt
aaggtcggatcgggatacactttacaggagctcctagatttcaaccagaaacttgccaaa
cactggaagaagtatgacaaagagaacccacctagatggttacagtgcacaagggagaaa
ccagagctctatgtggagccccagcattccttcatagttcaagtcaaagctaccgaaatc
aactcatctaatgtgtacaggacaggatgtacactacgattccctcgtctggagaaggtt
agagacgataaggactggcaccagtgtatgaccacagaagagatggagaacatgagacag
caagcagagggcaagttaacaggaagacacgttaacgtggatgacgatgagatcgtgact
actaagagaagaaaagcaacatcaagagcagtaattccggttgctgtgccatcaaggttc
agagctgcagacacttctaatgtcaaacagacgtctgaaatgctggagggacgagagctc
tgtatcatgaacagtcctgcaagccatcctaaggatcagctagagaagaagatagtagag
tgtggaggcttagtggttcagaacccaggtatagatacatactgtgtgctggcggacaag
gttaacctcaaggtcaagaacatattcagtgccaagatatatgacgttgtgaagacttca
tggctcattgaaagcctggatgccggtcgcttattgccatggttaccatcccatatgctg
ttcacctctgctaagatgacggctcagtttgccttggactatgactgtcatggagacagc
tatacacaggacgtcaatgaagagaaactcagggaggtctttgcaaatgtggagaagaag
aagagtaagcagccaatgactgctgaacagatagccgagatagagatggactactttcct
caagactccctccttggtctctttcgtctgtgccgtgtctatatggattcatgccttgtc
attggggaggaggacacacacatcaaagattgctctcttgacctggtatccttggagatg
aggtttcatggcgccaccatgtgtcctatgctagacaggcaggtcactcacatcatcgta
gacaaaagtgacctgagcagagtgagagagttccgtctacgaggccagaagcgagccttg
aagcagcacgtagtcacctcagaatgggtcagggattgcatccagaaagagaaatttctc
agtgaaaggccctatgaagcagcaatgtcttga

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