Strongylocentrotus purpuratus (purple sea urchin): 590369
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Entry
590369 CDS
T01019
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03008
Ribosome biogenesis in eukaryotes
spu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
590369
09123 Folding, sorting and degradation
03018 RNA degradation
590369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spu03021
]
590369
03019 Messenger RNA biogenesis [BR:
spu03019
]
590369
03009 Ribosome biogenesis [BR:
spu03009
]
590369
03016 Transfer RNA biogenesis [BR:
spu03016
]
590369
Transcription machinery [BR:
spu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
590369
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
590369
Ribosome biogenesis [BR:
spu03009
]
Eukaryotic type
Pre-60S particles
RNases
590369
Transfer RNA biogenesis [BR:
spu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
590369
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Mfa1
Motif
Other DBs
NCBI-GeneID:
590369
NCBI-ProteinID:
XP_030855693
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MGVPAFFRWLSKKYPSIVVHCLEEKAKEVDEVRIPVDTTQPNPNDVEFDNLYLDMNGIIH
PCCHPENKPAPKDEDEMMREIFLYIDRLISIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKESRDKRQDIARIRAEIADRGGYLPPPKAKESHFDSNCITPGTEFMFRLADCLRYYIT
ERLNSDPGWKDIKVILSDANTPGEGEHKIMDYIRKQRANPDHDPNTHHCMCGADADLIML
GLATHEVNFTIIREEFKPNQRRACELCNQEGHEMKECQGLPKERANELDTIPVPQGAETE
FIFLRLNILKEYLEKELWMTGLPFTFDLERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLIRLYKKAVYKTKGYLTENGVVNLERVQLMMTDLGEAEDEIFKKRRTTELGFRQRNKE
RNKRQRSSNAPAFVPGGVLAPTPITGGPSSSSAQQILDQRRDARTSSRDNANQSAADAMR
ASFKGGEQRGTKRGRGEEEDEDKDDTVRLWEDGWKERYYRNKFDVPSSDHDFRAKVVACY
VEGLCWVLRYYYQGCASWKWYFPYHYAPFASDFLDIKDLPNDFEKGTEPFHPLEQLMSVF
PAASGNFLPDSWREKMVDIDSPIIDLYPDDFQIDLNGKKYAWQGVALLPFVDEHRLLTTL
AGVYDNLTPIEKKRNSNGPDRLFVGKHHPLYNFIRELYETNSLEQAEPDTDMCPSLAHGV
RGKIGNDEFVTLPGRPHKSPVPLLRDIPESYVLGVTFRDPSYPADFIFEAKRLPGAKVPD
KVLKPEDFLNANGYRGGRGGGRGYRGGGRGGGRGFGGGGGGGGYRPQLGFQRNSGYRDGV
DTSAAQRMIRHGFDTSYVPTRDQDVQEYYGAIQLFNQWKNQHVQGGAVLYPSLAPQGAPV
NPYSASKPLPQLLQGAVPCSSQSHFLPSAYAMPACLSQPQASLSRHGANQGRNDQSILGP
APPAHHGGGGGGGYGGGYNQRQGGYGQGGYNQGGQSYNRNQQSNLGWNRNQQSQGQAYHQ
NQPRSHSYGAHNNQGYGGYNQQQQGYGGQSQQRQGGGGGNSYGNRDNRNQGWQGGNQGGG
GYPKPPGHSQRRY
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcatttttcaggtggctgagtaaaaaatatccgtcgattgttgtgcac
tgcttggaagaaaaggcaaaagaagttgacgaagtgaggattccagtcgatactacgcag
cctaaccccaatgatgtagagtttgacaacctctacctggacatgaatggaatcattcat
ccatgttgtcatccagagaataaacctgcgccaaaggatgaagatgagatgatgcgtgag
atcttcttgtacattgatcgcctgatcagcatagtgcgccctcgcaggttgctttacatg
gccatcgatggagtagctcctcgtgccaagatgaaccagcagcgttcacgtcgattcaga
gcttcaaaagagagcagagataaaaggcaagatatagcaaggatacgagctgagattgca
gaccgtgggggatacctccctcctcctaaggccaaagaaagccactttgatagcaactgc
atcacccctggtacagagtttatgtttcgtcttgctgactgcttgcgttattacatcact
gagagattgaacagtgatcctggctggaaagacatcaaggtgatcctttctgatgctaac
acaccaggagaaggtgaacacaagatcatggactacatcagaaagcaaagagccaatcca
gaccatgacccaaacactcaccattgtatgtgtggtgctgatgctgatctgattatgttg
ggtcttgctacccatgaggtgaatttcaccattatccgtgaggagttcaaaccaaatcag
agaagagcttgtgagctgtgcaaccaagaaggccatgaaatgaaggaatgccaggggctt
cccaaagaaagagcaaacgagctggacacgatacctgtaccacaaggagctgaaacagag
ttcatattcctcagactcaacatcctcaaagagtatctggagaaagagctgtggatgaca
gggttacctttcacctttgacctagagagagccattgatgactgggtttttatgtgtttc
tttgtgggtaacgacttcttgcctcatctgccttcacttgaaatcagggaaggggcgatt
gacaggctgatacgactttacaagaaggctgtctacaagacaaagggctacttgaccgag
aatggagtggtgaacctagaacgtgtccagctgatgatgaccgacctgggtgaagcagaa
gatgagatcttcaagaagaggagaaccactgagctgggcttcagacagagaaacaaggag
aggaacaagaggcagcgatcatcaaacgcaccagcttttgtaccaggaggtgtgcttgct
cctacacctatcactggtggaccatcatctagctcagctcagcagatcttagaccagcgt
agggatgctaggacgtcatcaagggataatgctaaccagagtgcagctgatgcaatgaga
gcttctttcaaaggaggagagcagagaggcactaagaggggccggggtgaggaggaggat
gaagacaaggatgatactgtcaggttatgggaagatggctggaaggagcgttactatcga
aacaagtttgatgttccttcctctgaccatgatttccgtgcaaaagtggttgcgtgctat
gtcgagggtctctgctgggtgcttcggtactactatcaagggtgtgcctcatggaagtgg
tacttcccttatcactacgccccattcgcttctgacttcctggatatcaaagacctccct
aatgactttgagaaaggaacggagcctttccatcccctggagcaactgatgagtgtattc
cctgcagccagtggtaacttccttccagattcatggagggaaaagatggtggatatcgat
tcacccatcattgacttatatccagacgacttccagattgatctcaatggaaagaagtat
gcatggcaaggtgtagcattactgccatttgtggatgaacaccggctcctgacaactctt
gcaggggtctatgacaatctcacaccgatagagaagaagagaaacagcaatggtcccgat
cgtttgtttgtgggaaagcatcaccctctctataacttcatcagagagctgtatgagacg
aacagtcttgaacaggctgagcctgatactgatatgtgcccctcacttgcccatggagta
agaggaaagattggcaatgatgagtttgttactctgcctggaagacctcacaagtcacca
gtacctctactgagagacattccagagagctatgtgttaggtgtgacattccgtgaccca
agctacccagcagatttcatatttgaggctaagagattacctggagccaaggtaccagat
aaagtcctgaagccagaggacttcttgaatgccaatgggtacagaggtgggcgtgggggt
ggacgggggtaccgtggtggaggacgtggtggagggcgtggcttcggtggtggtggcggc
ggcggtggatacagacctcagctgggcttccagagaaacagcgggtacagagatggagta
gataccagcgctgctcagaggatgatcaggcatggatttgacacaagttatgttccaaca
agggaccaggatgtccaagagtactatggtgctatccagctcttcaaccaatggaaaaac
cagcatgtacaagggggtgcagtcctgtacccctccttagcaccccaaggtgcacctgtg
aacccgtacagtgcatccaagcccctcccccagctcctgcaaggtgctgtgccttgttcc
agccagtcccacttcctccctagcgcttatgccatgccagcgtgcctaagccaaccccaa
gcaagtttgtcaagacatggtgcaaatcagggaaggaatgatcagtctatcttgggccct
gctcccccagcacaccacggaggaggaggaggaggaggatatggaggagggtacaaccag
aggcaaggaggatatggacaaggaggatacaatcaaggaggacaatcttataacagaaat
caacagtccaacctaggatggaaccgcaaccagcaatcgcagggtcaggcctaccaccag
aaccagccccgctcccatagctatggggcacataataaccaaggttatggtggttataac
cagcagcagcagggctatgggggacagagtcagcaacgacaaggaggaggaggaggaaat
agctatggcaacagagacaacaggaatcaaggatggcagggtggaaaccagggaggagga
ggataccccaagcctcctggccactcccagaggagatactaa
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