KEGG   Streptomyces puniciscabiei: BFF78_39610Help
Entry
BFF78_39610       CDS       T05140                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spun  Streptomyces puniciscabiei
Pathway
spun03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spun00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BFF78_39610
Enzymes [BR:spun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BFF78_39610
DNA repair and recombination proteins [BR:spun03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BFF78_39610
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AOR36357
UniProt: A0A1D7YL82
LinkDB All DBs
Position
complement(9123876..9124886)
Genome map
AA seq 336 aa AA seqDB search
MPELLRALPAELREALRPARPGPELAASPMLATLSDRREFGADWLFERKLDGVRLLAVRE
GGDVRLLSRTGQRLNDTYPEIVEALAAQKRADFTVDGEVVAFSGGRTDFARLQRRIGLTR
RRDIEASGVAVTYYLFDLLRLEGADTRRLPLRVRKSLLRRALTFRAPLRLTPHRNAGGAE
LLAEACARGWEGLIAKRADGPYRTRRSTDWLKLKCARGQEFVIGGFTEPAGSRVGLGALL
LGHYDGDRLCYAGKVGTGFDRRALLGLRERLDGLRRDSSPFTGAVREARARWVKPELVAQ
IAFTEWTRDGMLRHPRYLGLREDKRPRDVVRERTAA
NT seq 1011 nt NT seq  +upstreamnt  +downstreamnt
gtgccggagctgctgcgggcgctgccggccgagctgcgggaggcgctgcgcccggcccgg
ccgggtccggaactcgccgcgtccccgatgctggccacgctcagcgaccggcgggagttc
ggcgcggactggctgttcgagcggaagctggacggcgtccggctcctggcggtgcgcgag
ggcggcgacgtacggctgctgtcgcgcacggggcagcggctgaacgacacctacccggag
atcgtcgaggcgctcgcggcacagaagcgcgccgatttcacggtggacggcgaggtcgtg
gcgttctccggcgggcgtaccgacttcgcccggctgcaacggcggatcgggctgacccgg
cgccgggacatcgaggcgtccggggtcgcggtgacgtactacctcttcgacctgctgcgg
ctggagggcgcggacacccgtcgactcccgttgcgcgtccgcaagtcgctgctgcgccgg
gcgctcaccttccgtgccccgctgcggctgaccccgcatcgcaacgcgggcggcgccgag
ttgctggccgaggcctgcgcgcggggctgggaggggctgatcgccaagcgggccgacggg
ccgtaccggacgcgccggtccacggactggctgaagctcaagtgcgcgcgggggcaggag
ttcgtgatcgggggcttcacggaaccggcgggcagccgtgtcgggttgggggccctgctg
ctcggccattacgacggtgaccggctgtgctacgccgggaaggtcggcaccggcttcgac
cggcgggcgttgctggggctgcgcgagcggctggacgggctgcgccgggactcctcgccc
ttcaccggcgccgtgcgcgaggccagggcccgctgggtgaagccggagctggtcgcgcag
atcgccttcaccgagtggacccgggacgggatgctgcggcacccccgctacctggggctg
cgcgaggacaaacggccacgggacgtggtgcgggagcgcacggcggcctga

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