Serratia plymuthica AS9: SerAS9_0120
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Entry
SerAS9_0120 CDS
T01503
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
3.6.4.13
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS9_0120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srr03019
]
SerAS9_0120
Messenger RNA biogenesis [BR:
srr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SerAS9_0120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF43282
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Position
complement(141084..142373)
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AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSNPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARPRGGNGPRRNSAPRRGGSA
PRNNRKRPG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgaaaaaaaagggtttcaccattgcacgcctatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ttggcatttttagcgtctacttttcactatttgctttctaacccggcgaaacaggatcgc
cagaccaaccagccgcgtgccttgatcatggcgccaacgcgtgaactggcggtgcagatc
cactccgatgcggaagccctgtcccagtccaccggcctgaaacttggcctggcttacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggatatcctggtgggt
actaccggtcgtttaatcgattacgccaaacagaactacatcgatctgggcgcgatccag
gtcgtagtgctggacgaagccgatcgcatgtacgatctgggctttatcaaagacattcgc
tggctgttccgccgcatgcctgcggtcgatcaacgcctgaacatgctgttctctgccacc
ctgtcctatcgcgtacgcgaactggctttcgagcagatgaacaacgctgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattcaagaagaattgttctacccgtccaac
gaagaaaagatgcgcctgctgcagacgctgatcgaagaagagtggccggaccgctgcatc
atcttcgccaacaccaagcatcgctgtgaagacgtctggggccatttggcggccgacggg
caccgcgtaggcctgctgaccggcgatgtggcgcagaaaaaacgcctgcgtattctggaa
gacttcaccaagggcaacctcgatattctggtcgccaccgacgtcgccgcccgtggtctg
cacatcccgttggttacgcacgtattcaactacgatctgcctgacgactgcgaagactat
gttcaccgcatcggtcgtaccggccgtgccggcgaaagcggccattccatcagcctggcc
tgcgaagagtacgcgctcaacctgccggcgatcgaaacctataccggccacagcattccg
gtgagcaagtacaacagcgacgcgttgctgactgacctgcctgcgccgaaacgccttgcg
cgtccacgcggcggcaatggcccgcgccgtaattccgcaccgcgtcgcggtggcagcgcg
ccacgcaataaccgtaaacgtccaggctga
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