Serratia plymuthica AS9: SerAS9_0234
Help
Entry
SerAS9_0234 CDS
T01503
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SerAS9_0234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srr03021
]
SerAS9_0234
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_0234
Enzymes [BR:
srr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SerAS9_0234
Transcription machinery [BR:
srr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SerAS9_0234
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SerAS9_0234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AEF43396
LinkDB
All DBs
Position
268368..272396
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTEQILDLFFAKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYIEKGRRITARHIRQLEKDEIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDDDGRFEEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMLAGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGVEAEKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQHQEVAK
LREFIQKAYDLGDDVCQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gttctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagacccagaagggcagtacggccttgaagccgcattccgttctgttttccctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagatccgtggtgtgacgtattctgcaccgctgcgcgtaaaactg
cgcctggtaatctatgagcgcgaagctccggaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaacggtacctttgtgatcaacggt
actgagagggttatcgtatctcagcttcaccgtagtcctggcgtattctttgacagcgat
aagggtaaaacccactcctcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttggatttcgagtttgacccgaaagacaacctgttcgtgcgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgcgcgctgcaattcaccactgagcagatc
cttgacctgttctttgcgaaagttgtgttcgagatccgtgataacaagctgcagatggag
ctggttccagagcgtctgcgtggtgaaactgcttcgtttgatatcgaagccaacggcaag
atctacattgagaaaggccgtcgtatcaccgctcgtcatatccgtcagctcgaaaaagac
gaaattcagagtattgaagtaccggttgagtacattgcgggcaaagtggtcgcgaaggac
tatatcgataccaataccggcgagctgatctgcgcagccaacatggagctgtcgctggat
ttgctggctaaactgagccagtcaggccacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggtgcgtatatctctgagactatacgtgtcgacccaaccagcgatcgtctg
agcgcactggtagaaatctaccgcatgatgcgccctggtgagccgccaacgcgcgaagct
gccgaaagcctgttcgagaacctgttcttctctgaagaccgctacgatttgtctgcggtt
ggtcgtatgaagttcaaccgttccctgctgcgcgacgagatcgaaggttcgggtatcctg
agcaaagacgacatcattgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccatttgggcaaccgtcgtatccgttccgtcggcgaaatggct
gagaaccagttccgtgtaggcctggtgcgtgttgagcgtgcggttaaagaacgtctgtcc
ctgggcgatctggacaccctgatgcctcaggacatgatcaacgccaagccgatttcggct
gcggtgaaagagttcttcggctccagccagctgtctcaatttatggaccagaacaacccg
ttgtccgagattacgcacaaacgtcgtatctctgcattgggcccaggcggtctgacccgt
gaacgcgccggcttcgaagttcgagacgtacacccgactcactatggtcgcgtgtgtcca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggtctggttacc
gatgaaatcaactacctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgatgacggccgcttcgaagaagacctggtcacctgtcgtagcaaaggc
gaatcgagcctgtttagccgcgatcaggttgactatatggacgtatcaacccagcaggtt
gtctccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgtgctgacaagccgctggtt
ggtaccggtatggaacgtgcggttgcggttgactccggtgttactgccgtagccaaacgt
ggcggcgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgctcgcgggcgaagcaggtatcgatatttataacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaacctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtccacggacctgggtgaattggcgctgggccagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcttggtgtccgag
cgtgtggttcaggaagatcgcttcacgaccatccacattcaggaactggcgtgcgtgtct
cgcgacaccaagttggggcctgaagagatcactgccgatatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtatatatcggtgctgaagtgaccggtggc
gacattctggtgggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacggttatcgacgtgcaggtcttcacccgtgatggcgtggac
aaagacaagcgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagctggcctgtttgcacgtatccatgcggtgttggtt
gccggcggcgttgaagctgagaagctgagcaagctgccacgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggaacagctggcagagcagtacgacgag
ctgaaatccgacttcgagaagaagctggacgccaagcgtcgtaagatcacccaaggcgac
gatctggcaccaggcgtgctgaaaatcgttaaggtttatctggccgttaagcgtcagatt
caaccgggtgacaagatggcaggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggttgacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gcgaaaggcattggtgagaagatcaaccaaatgctgaagcagcatcaggaagtggccaag
ctgcgtgagttcattcagaaggcttacgatctgggcgacgatgtctgccagaaagttgac
ctgaacactttcaccgacgacgaagtactgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgccacgccggtgtttgatggtgcgaaagagagtgaaatcaagcaactgctggaa
atgggcggaatcccaacttctggtcagattacgctgttcgatggccgtaccggtgagcag
ttcgagcgccaggttaccgttggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggttcgtacagcttggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgcagcttataccctgcaggaaatgctcaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgcatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgctcgctcggtatcaacatcgaactggaa
gacgagtaa
DBGET
integrated database retrieval system