KEGG   Serratia plymuthica AS9: SerAS9_0234
Entry
SerAS9_0234       CDS       T01503                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
srr  Serratia plymuthica AS9
Pathway
srr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:srr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SerAS9_0234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srr03021]
    SerAS9_0234
   03400 DNA repair and recombination proteins [BR:srr03400]
    SerAS9_0234
Enzymes [BR:srr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SerAS9_0234
Transcription machinery [BR:srr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SerAS9_0234
DNA repair and recombination proteins [BR:srr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SerAS9_0234
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AEF43396
LinkDB
Position
268368..272396
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQFTTEQILDLFFAKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYIEKGRRITARHIRQLEKDEIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDDDGRFEEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMLAGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGVEAEKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQHQEVAK
LREFIQKAYDLGDDVCQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gttctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagacccagaagggcagtacggccttgaagccgcattccgttctgttttccctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagatccgtggtgtgacgtattctgcaccgctgcgcgtaaaactg
cgcctggtaatctatgagcgcgaagctccggaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaacggtacctttgtgatcaacggt
actgagagggttatcgtatctcagcttcaccgtagtcctggcgtattctttgacagcgat
aagggtaaaacccactcctcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttggatttcgagtttgacccgaaagacaacctgttcgtgcgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgcgcgctgcaattcaccactgagcagatc
cttgacctgttctttgcgaaagttgtgttcgagatccgtgataacaagctgcagatggag
ctggttccagagcgtctgcgtggtgaaactgcttcgtttgatatcgaagccaacggcaag
atctacattgagaaaggccgtcgtatcaccgctcgtcatatccgtcagctcgaaaaagac
gaaattcagagtattgaagtaccggttgagtacattgcgggcaaagtggtcgcgaaggac
tatatcgataccaataccggcgagctgatctgcgcagccaacatggagctgtcgctggat
ttgctggctaaactgagccagtcaggccacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggtgcgtatatctctgagactatacgtgtcgacccaaccagcgatcgtctg
agcgcactggtagaaatctaccgcatgatgcgccctggtgagccgccaacgcgcgaagct
gccgaaagcctgttcgagaacctgttcttctctgaagaccgctacgatttgtctgcggtt
ggtcgtatgaagttcaaccgttccctgctgcgcgacgagatcgaaggttcgggtatcctg
agcaaagacgacatcattgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccatttgggcaaccgtcgtatccgttccgtcggcgaaatggct
gagaaccagttccgtgtaggcctggtgcgtgttgagcgtgcggttaaagaacgtctgtcc
ctgggcgatctggacaccctgatgcctcaggacatgatcaacgccaagccgatttcggct
gcggtgaaagagttcttcggctccagccagctgtctcaatttatggaccagaacaacccg
ttgtccgagattacgcacaaacgtcgtatctctgcattgggcccaggcggtctgacccgt
gaacgcgccggcttcgaagttcgagacgtacacccgactcactatggtcgcgtgtgtcca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggtctggttacc
gatgaaatcaactacctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgatgacggccgcttcgaagaagacctggtcacctgtcgtagcaaaggc
gaatcgagcctgtttagccgcgatcaggttgactatatggacgtatcaacccagcaggtt
gtctccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgtgctgacaagccgctggtt
ggtaccggtatggaacgtgcggttgcggttgactccggtgttactgccgtagccaaacgt
ggcggcgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgctcgcgggcgaagcaggtatcgatatttataacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaacctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtccacggacctgggtgaattggcgctgggccagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcttggtgtccgag
cgtgtggttcaggaagatcgcttcacgaccatccacattcaggaactggcgtgcgtgtct
cgcgacaccaagttggggcctgaagagatcactgccgatatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtatatatcggtgctgaagtgaccggtggc
gacattctggtgggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacggttatcgacgtgcaggtcttcacccgtgatggcgtggac
aaagacaagcgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagctggcctgtttgcacgtatccatgcggtgttggtt
gccggcggcgttgaagctgagaagctgagcaagctgccacgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggaacagctggcagagcagtacgacgag
ctgaaatccgacttcgagaagaagctggacgccaagcgtcgtaagatcacccaaggcgac
gatctggcaccaggcgtgctgaaaatcgttaaggtttatctggccgttaagcgtcagatt
caaccgggtgacaagatggcaggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggttgacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gcgaaaggcattggtgagaagatcaaccaaatgctgaagcagcatcaggaagtggccaag
ctgcgtgagttcattcagaaggcttacgatctgggcgacgatgtctgccagaaagttgac
ctgaacactttcaccgacgacgaagtactgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgccacgccggtgtttgatggtgcgaaagagagtgaaatcaagcaactgctggaa
atgggcggaatcccaacttctggtcagattacgctgttcgatggccgtaccggtgagcag
ttcgagcgccaggttaccgttggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggttcgtacagcttggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgcagcttataccctgcaggaaatgctcaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgcatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgctcgctcggtatcaacatcgaactggaa
gacgagtaa

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