Serratia plymuthica AS9: SerAS9_1284
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Entry
SerAS9_1284 CDS
T01503
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
srr
Serratia plymuthica AS9
Pathway
srr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SerAS9_1284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_1284
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SerAS9_1284
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SerAS9_1284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
AAA_22
zf-C4H2
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEF44422
LinkDB
All DBs
Position
1405213..1407225
Genome browser
AA seq
670 aa
AA seq
DB search
MSKIFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPELYLKMMLHLTKGMIIDQRSILRRLTELQ
YSRNDQAFQRATFRVRGEVIDIFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQR
FTIYPKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRSEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLD
PIVEVRPVTTQVDDLLSEIRKRVAVKERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITDSMARAIGETERRRVKQQAFNEENGIVPKGLNKKVSDILQLG
QPGNRSKGRGKGKAVESAAQYQHLTPKALDQKIRELEAQMYTHAQNLEFEQAAGLRDEIH
QLREQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaattttcaaactgcattccgatttcaaaccggccggcgatcagccggaagcc
attcgcaagctggaagagggcctggaagacggcctggcgcatcaaacgctgttgggcgtt
accggttcgggcaagacatttaccatcgccaacgtcatcgctgatctaaaccggccgacc
atggtgctggcgccaaacaagacgctggcggcgcagctgtatggcgagatgaaagagttc
ttccccgagaatgcggttgagtattttgtctcgtactacgactactaccagccggaagcc
tatgttcccagctccgatacctttattgaaaaagactccgcggtgaacgagcacatcgaa
caaatgcgtctttcagccaccaaagcgctgctggaacgccgcgacgtggtggtggtggca
tcggtgtcggcaatctacggtctgggcgatccggagctgtatctgaagatgatgctgcac
ctgaccaagggcatgatcatcgatcaacgttcgatcctgcggcgtttgacggagctgcaa
tattcccgcaacgatcaggctttccagcgcgccaccttccgcgtgcgcggcgaggtgatc
gacatcttcccggcagagtcggacgaactggcgctacgcatcgagctgtttgatgaagaa
gtcgaacggctttcgctgttcgatccgctgaccggccagatcgagcaggtggtgcagcgc
ttcaccatttatccgaagtcgcactacgtgacgccgcgcgagcggatcctgcaggcgatg
gaagagatcaaggtggatctggccgagcggcgcaaggtgctgctggccaataacaagctg
ttggaagaacagcgcctgacgcagcgtacccagtttgatctggagatgatgaacgagctg
ggctactgctccggcattgaaaactattcgcgctatttgtccgggcgcagcgagggcgag
ccgccaccgacgctgtttgactacttgccggcggatggcctgctggtggtcgatgaatcg
cacgtcaccattccgcaaatcggcggcatgtacaaaggtgaccgctcgcgcaaggaaacg
ctggtggaatacggtttccgcctgccgtcggcgctggataaccgcccgatgcgttttgaa
gagttcgaagcgctggcgccgcagactatctatgtgtccgccacgccgggcaaatatgag
ctggagaaatccggcgacgacattattgatcaggtcgtgcggcctaccgggctgctggat
ccgatagtggaagtgcggccggtcaccacccaggtggacgacctgctttccgagatccgc
aagcgggtggcggtcaaggaacgcgtgttggtgaccaccctgaccaagcgcatggcggaa
gatttgaccgaatacctggaagagcacggcgagcgcgtgcgctatctgcactcggacatc
gataccgtagaacgcgtcgaaatcattcgtgacctgcgtctgggcgagtttgacgtgctg
gtgggcatcaatctgttgcgtgaagggctggacatgcctgaggtgtcgctggtggcgatt
ctggacgcagacaaggaaggtttcctgcgttccgaacgctccctgatccagaccatcggg
cgcgcggcgcgtaatctcaacggcaaggcaatcctctacggcgacagaattaccgactcg
atggccagggcgattggcgagaccgaacgccgccgcgtcaagcagcaggcgttcaacgaa
gaaaacggcattgtgcctaaaggcctgaacaagaaagtgtccgatatcctgcagttgggc
cagccgggcaaccgcagcaagggccgagggaagggcaaggccgtggaaagcgccgcccag
tatcagcacctgacgccaaaagcgctggatcagaaaatccgcgagctggaagcgcagatg
tatacccacgcgcagaatctggagttcgagcaggctgccggtttgcgtgacgaaatccac
cagttgcgcgagcagtttatcgccatttcgtga
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integrated database retrieval system
