Serratia plymuthica AS9: SerAS9_1298
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Entry
SerAS9_1298 CDS
T01503
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS9_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srr03019
]
SerAS9_1298
Enzymes [BR:
srr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SerAS9_1298
Messenger RNA biogenesis [BR:
srr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SerAS9_1298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Shikimate_DH
DUF5693
Motif
Other DBs
NCBI-ProteinID:
AEF44436
LinkDB
All DBs
Position
1419192..1420556
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AA seq
454 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQHAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQGGGRGNGGGQRSGNGGGQRSGNGGGHSG
QRENRGGGSARPQGDGKPRSGAPARRPRSRKPGE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcagcgccaggctattcctgtcgtattggaaggtcgtgac
ctgatggccagcgcccagaccggtaccggtaaaaccgctggctttaccctgccgctgcta
cagctgctgagtaagcatgaccatgcggtcaaaggtcgccgtccggtacgtgcgttgatc
ctgacgccaacccgtgaactggcggcacagatcggcgaaaacgtcgaagcttacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aaattgcgcggcggcgtcgacattctggtggcaacaccgggtcgcctgctggatctggaa
caccagcacgcagttgatctgtccaaaattgaaattctggtgctggacgaagctgaccgc
atgctggatatgggctttatccatgatatccgccgcgtgctggccaagctgcctgccaag
cgtcagaacctgctgttctccgcgactttctccgacgaaatcaaggggcttgccaacaag
ctgctgcacaacccggcatcggtggaagtggcgcgccgcaataccgcgtccgagcagatc
gaacaaagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaagcaagtcttggtgttcaaccgcaccaaacacggcgccaaccac
ctggccgagcagctgaacaaagacggtatcactgccgcagcgatccacggcaataaaagc
cagggcgcgcgtacccgtgcattggccgattttaaagacggcaaaattcgcgtgctggtg
gcaaccgacatcgcggcgcgcggtctggacatcgaccaactgccgcacgtggtgaactac
gagttgcctaacgtgccggaagattacgtgcaccgcatcggccgtaccggccgtgcagag
cgtaccggtgaggctatctcgttggtctgcgtggatgaacacaaactgctgcgcgacatc
gagcgcctgctgaagcgtgaaatcccgcgtattgccctgccaggctacgagccggaccca
agcatcaaggcggagccgatcatcaacggccgtcagggtggcgggcgcggcaacggcggc
ggtcaacgctccggtaacggtggcggccagcgcagcggtaatggcggcggccatagcggc
caacgtgaaaaccgtggcggcggcagtgcccgccctcagggtgacggcaagccgcgctca
ggcgcgccggcacgccgtccgcgcagccgcaaaccgggcgaataa
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