Serratia plymuthica AS9: SerAS9_3635
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Entry
SerAS9_3635 CDS
T01503
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
srr
Serratia plymuthica AS9
Pathway
srr03030
DNA replication
srr03410
Base excision repair
srr03420
Nucleotide excision repair
srr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SerAS9_3635
03410 Base excision repair
SerAS9_3635
03420 Nucleotide excision repair
SerAS9_3635
03430 Mismatch repair
SerAS9_3635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srr03032
]
SerAS9_3635
03400 DNA repair and recombination proteins [BR:
srr03400
]
SerAS9_3635
Enzymes [BR:
srr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SerAS9_3635
DNA replication proteins [BR:
srr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SerAS9_3635
DNA repair and recombination proteins [BR:
srr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SerAS9_3635
NER (nucleotide excision repair)
GGR (global genome repair) factors
SerAS9_3635
MMR (mismatch excision repair)
DNA ligase
SerAS9_3635
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SerAS9_3635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEF46744
LinkDB
All DBs
Position
complement(3880317..3882338)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMHELRELENAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAG
FEQMNDEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVFPLHCPVCGSDVERVEG
EAVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFHLSAG
ILTGLDRMGPKSAQNLVNALEKSKRTTFARFLYALGIREVGEATAANLAAHFGELQKLYD
ADIDALKQVPDVGEVVAKHVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIA
VIDEAEMIRLLGV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgaacctcactgcgccatcacgaatac
caatatcatgtgcttgatgcgccggaagtgccggatgcggaatatgatcgtctgatgcat
gagttgcgtgagctggaaaacgcgcacccggagctgatcaccgccgattcaccgacccag
cgcgtgggcgccgctccgctggcggcgttcgatcaggtgcggcatgaagtgccgatgctg
tcgctggataacgtattcgacgaagaaagctttctggcgttctacaaacgcgtgcaggat
cgcctgaagagcagcgatccgctcactttctgttgtgagctgaagctggacggtctggcg
gtcagcctgctgtacgaagacggcgaactggtgcgtgcagccacgcgcggcgacggcacc
accggcgagaacattacctccaacgtgcgtaccatccgcgccattccgttgcgtctgagc
ggcgacaatatcccgcgtcggctggaagtgcgcggcgaagtgtttatgccgcaggccggc
tttgaacagatgaacgatgaggcgcgtcgcaaggacggcaagatatttgccaacccgcgc
aacgccgccgccggttctatccgtcagctcgatccgcgcattaccgccaaacgcccactg
acctttttctgctatggcgttggcctgctggaaggcggcgagctgccgcgcagtcactgg
cagcgcctgatgcagtttaaaaactggggcttaccggtcagcgatcgcgccaaatgctgc
accggcagcgacgaagtattggctttctaccgccaggtggagcaggaccgcgcacagctc
gggttcgatatcgacggtgtggtggtcaaaattgatgatatcgatctgcaggaaacgctt
ggctttgtggcgcgagcgccacgttgggcgacggcattcaagttcccggcgcaggaacaa
attaccgtggtgcgtgaagtggaattccaggttgggcgtaccggggcgataacgccggtg
gcgcgactggaaccggtgcaggttgccggcgtgatcgtcagcaacgccacgctgcacaat
gccgacgagatcgaacgtttgggcctgcgtatcggcgatacggtgatcgtgcgccgtgcc
ggtgacgtgatcccgaaggtggtcggggtgattgaggatcgccgcccgcaggacgcgcgt
gaaatcgtgttcccactgcattgcccggtctgtggttccgatgtggagcgggttgagggc
gaggcggtaacgcgttgtaccggtgggctgatttgcgccgcgcagcgtaaagaagcgctg
aagcacttcgtttcccggcgcgcgatggacgtcgacggcatgggcgacaagatcatcgag
caactggtagaaaaagaatatgtgaagaatccggccgatttattccacttgtccgcgggt
attctgaccgggttggatcgcatggggccaaagtcggcgcagaacctggtcaacgcgctg
gagaaatccaagcggaccacctttgcccgtttcctgtatgcgctcggcatccgcgaagtg
ggcgaggccacggcggctaacctggcggcgcacttcggcgaactgcaaaagctgtacgac
gccgatatcgacgcgttgaaacaagttccggacgtcggtgaggtggtggcgaagcatgtg
cgtcatttcctcgacgaagagcttaaccagaaggtgatcgacgaactgattggcgccgag
attggcatcaactggccggaagtggtggtggtagcggcggaagagatcgacagcccgttt
gccggtaaaaccgtggtgttgaccggttcgttgagccaactttcacgcgatgaggctaaa
gatcgtctgacggcactgggcgccaaggtcagcggcagcgtctcgaaaaagactgatttg
gtgattgccggcgaagcggccggctccaagctggtgaaggcgcaggaactgggcattgca
gtgatcgacgaagcggaaatgatccgcctgctgggtgtctga
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