Serratia sp. AS12: SerAS12_1843
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Entry
SerAS12_1843 CDS
T01502
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srs
Serratia sp. AS12
Pathway
srs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS12_1843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srs03019
]
SerAS12_1843
03009 Ribosome biogenesis [BR:
srs03009
]
SerAS12_1843
Enzymes [BR:
srs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SerAS12_1843
Messenger RNA biogenesis [BR:
srs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SerAS12_1843
Ribosome biogenesis [BR:
srs03009
]
Prokaryotic type
rRNA processing factors
SerAS12_1843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AEF49924
LinkDB
All DBs
Position
complement(1996614..1999976)
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AA seq
1120 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAEEPVVAQAATAAVVTKPSAPSAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKA
EGNGENRRQDRRGQRRQGSGRKERGERGERGERSDRPERGERKERGEGRDNRERDNREPR
ENREPRDNRSEGRETREVRDEQRRNNRRNTPQVAAPVAEVPQSEEAAKAQREEQQQRRDQ
RAERQRRRQEEKRQAQQEVAALESVDTSTNVISDEDLEERQQQNMQRRQRRPLSQKVRVL
SAEEELHRAAEELLAPKAPVVKTQDAKPAVEENSVKLLPETLDAPAEDDVQGDNRNGENG
MPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAGAFASPEMASGKVWVSYPVTQTAQ
VIEEVEVQTDATEIAADNVMAQETASVAAPVIAEAAAQTIAPVETAEVVIAEEAQPEVET
VAPIITAQLEKTAAVQQAEMPVVEEATVVEETTATEAAPAVEAPPVVEVTAAVVEPVAAP
APVVVEAAPVQEVAAPVVVVEKAPVVQQPVQMQAVQDVLYKHIATAPMTKAPAPAYEPEE
QKGSDWQRPSFNFEGKGSAGGHAAVNQATAPATKPQPVNE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggacattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcactcgtattgagccaagtcttgaagcagcgttcgttgattac
ggtgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagt
aactactcttcccatggtcgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
atcgttcaggttgataaagaagaacgtggtaacaaaggcgcagccttgaccaccttcatc
agtctggccggcagttatctggtgctgatgccgaacaacccgcgtgccggtggcatttcc
cgccgcatagagggtgacgaccgcaccgaactgaaagaagcgctttcctccctgcaattg
cctgatggcatgggcctcattgtgcgtaccgcaggcgttggcaaatctgccgatgcactg
cagtgggacctgtctttccgtctgaagcattgggaagccatcaagaaagccgccgaaggc
cgtcctgctccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgccttccgtgac
tatctgcgcccggatatcggcgaaatcctgatcgataaccctaaagttctcgatttggca
aaagagcacatcgctgctctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaatccctctgttcagccattaccaaatcgaatctcagatcgaatccgccttccag
cgtgaagttcgcttgccttccggcggctcgatcgtcatcgacactaccgaagcgttgacc
gccatcgacatcaactccgcgcgagcaacccgcggtggcgatatcgaagaaactgcgttc
aacaccaacctggaagcggcggacgaaatcgctcgccagttgcgtttgcgtgaccttggc
ggcctgatcgttatcgacttcatcgatatgactccagtgcgccaccagcgcgaagtagaa
aaccgcctgcgtgacgcagtgcgccaagaccgtgcgcgtatccagatcggccgcatttcc
cgctttggcctgcttgagatgtcgcgtcagcgcctcagcccgtcactgggtgaatccagt
catcacgtctgccctcgctgtaacggcaccggcactatccgtgataacgaatcgctggca
ctttccattctgcgcctgatcgaagaagaagcgctgaaggaaaataccaaagaagttcac
gctatcgtgccagttcaggttgcctcttacctgctgaacgaaaaacgtgagtcggtgagc
gcaatcgaaaaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaa
accccacactactccgtactgcgtgtacgcaaaggcgaagaaacaccaaccctgagctac
ctgctgccgaaattgcacgaagaagagatggctcagccactggaagatgcgccgatggag
cgcaaacgtccggaacaaccggctctggcctcgttctctctggctgctgacgcgccgccg
cctgccgaagaacctgtggtggcacaggccgctactgccgctgtagtgaccaagccaagc
gccccaagcgctgccaaaccaggtctgttgggccgcctgttcggtggtttgaaagcgctg
ttcgccagtgaagaacaacctgttgttgaagccaaacctgccgttgaagcacctaaggcc
gaaggcaacggtgaaaaccgccgccaggatcgccgtggtcaacgccgtcagggctctggc
cgtaaagaacgtggtgaacgcggggaacgtggtgagcgtagcgatcgtcctgaacgtggc
gaacgcaaggaacgcggcgaaggccgtgacaatcgcgagcgagataaccgtgaaccacgt
gaaaatcgtgagccgcgcgacaatcgcagcgaaggccgtgaaacgcgtgaagtgcgcgat
gaacaacgccgtaacaaccgccgcaatacgccgcaggttgcagcaccggttgccgaggtg
ccacagtctgaagaagccgccaaggcacagcgtgaagagcagcaacaacgccgtgaccag
cgtgccgaacgccagcgccgtcgtcaggaagagaagcgccaggctcagcaggaagtagct
gcactggaaagtgtagacaccagcaccaacgttatcagcgatgaagatctggaagaacgc
cagcagcagaacatgcaacgtcgccagcgtcgtcctctgtcgcagaaagttcgcgtcctg
tccgcggaagaagaactgcatcgcgcagcggaagaactgctggcgcctaaagcaccggtt
gtgaaaacccaagacgcgaagccggctgtggaagaaaacagcgttaaactgctgccagaa
acccttgatgcaccggctgaagatgatgttcagggcgacaaccgtaatggcgaaaatggc
atgccacgccgttcacgccgctcaccacgtcatcttcgcgtgagcggtcaacgccgtcgc
cgttaccgtgatgagcgttaccctgcccagtcaccgatgccgctggccggggctttcgcc
tcaccggaaatggcttctggcaaggtatgggtcagttaccctgtaacacaaactgcgcaa
gtgattgaagaagttgaagttcagactgacgctaccgaaatcgctgccgacaacgtgatg
gcacaagaaaccgccagcgtagccgctccggttatcgctgaggctgccgcgcaaaccatc
gcaccggtagaaaccgctgaagttgtcattgcagaagaagcccagccggaagttgaaact
gttgcgccgatcattacggctcaattggagaaaactgctgcggtgcagcaggctgagatg
ccagtagttgaagaagcaaccgtggttgaagaaactactgcgactgaagctgccccggcg
gttgaagcaccgcctgttgtggaagtgactgctgctgttgtagagcctgtcgcagcgcca
gcgccagtcgtcgttgaagccgcacctgttcaggaagttgccgctccggtcgttgttgta
gaaaaagcgccggttgttcagcaaccagtacagatgcaagccgtgcaggatgtgctctat
aaacatatcgccacagcgccaatgaccaaggcccctgcgccggcttacgagccggaagag
cagaaaggcagtgattggcaacgcccttccttcaatttcgaaggtaaaggctcggcgggg
gggcatgctgcggtgaatcaagccacagctccggcaaccaaaccgcagccggttaacgaa
taa
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