KEGG   Serratia sp. AS12: SerAS12_1843
Entry
SerAS12_1843      CDS       T01502                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
srs  Serratia sp. AS12
Pathway
srs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:srs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SerAS12_1843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srs03019]
    SerAS12_1843
   03009 Ribosome biogenesis [BR:srs03009]
    SerAS12_1843
Enzymes [BR:srs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SerAS12_1843
Messenger RNA biogenesis [BR:srs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SerAS12_1843
Ribosome biogenesis [BR:srs03009]
 Prokaryotic type
  rRNA processing factors
   SerAS12_1843
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AEF49924
LinkDB
Position
complement(1996614..1999976)
AA seq 1120 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAEEPVVAQAATAAVVTKPSAPSAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKA
EGNGENRRQDRRGQRRQGSGRKERGERGERGERSDRPERGERKERGEGRDNRERDNREPR
ENREPRDNRSEGRETREVRDEQRRNNRRNTPQVAAPVAEVPQSEEAAKAQREEQQQRRDQ
RAERQRRRQEEKRQAQQEVAALESVDTSTNVISDEDLEERQQQNMQRRQRRPLSQKVRVL
SAEEELHRAAEELLAPKAPVVKTQDAKPAVEENSVKLLPETLDAPAEDDVQGDNRNGENG
MPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAGAFASPEMASGKVWVSYPVTQTAQ
VIEEVEVQTDATEIAADNVMAQETASVAAPVIAEAAAQTIAPVETAEVVIAEEAQPEVET
VAPIITAQLEKTAAVQQAEMPVVEEATVVEETTATEAAPAVEAPPVVEVTAAVVEPVAAP
APVVVEAAPVQEVAAPVVVVEKAPVVQQPVQMQAVQDVLYKHIATAPMTKAPAPAYEPEE
QKGSDWQRPSFNFEGKGSAGGHAAVNQATAPATKPQPVNE
NT seq 3363 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggacattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcactcgtattgagccaagtcttgaagcagcgttcgttgattac
ggtgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagt
aactactcttcccatggtcgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
atcgttcaggttgataaagaagaacgtggtaacaaaggcgcagccttgaccaccttcatc
agtctggccggcagttatctggtgctgatgccgaacaacccgcgtgccggtggcatttcc
cgccgcatagagggtgacgaccgcaccgaactgaaagaagcgctttcctccctgcaattg
cctgatggcatgggcctcattgtgcgtaccgcaggcgttggcaaatctgccgatgcactg
cagtgggacctgtctttccgtctgaagcattgggaagccatcaagaaagccgccgaaggc
cgtcctgctccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgccttccgtgac
tatctgcgcccggatatcggcgaaatcctgatcgataaccctaaagttctcgatttggca
aaagagcacatcgctgctctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaatccctctgttcagccattaccaaatcgaatctcagatcgaatccgccttccag
cgtgaagttcgcttgccttccggcggctcgatcgtcatcgacactaccgaagcgttgacc
gccatcgacatcaactccgcgcgagcaacccgcggtggcgatatcgaagaaactgcgttc
aacaccaacctggaagcggcggacgaaatcgctcgccagttgcgtttgcgtgaccttggc
ggcctgatcgttatcgacttcatcgatatgactccagtgcgccaccagcgcgaagtagaa
aaccgcctgcgtgacgcagtgcgccaagaccgtgcgcgtatccagatcggccgcatttcc
cgctttggcctgcttgagatgtcgcgtcagcgcctcagcccgtcactgggtgaatccagt
catcacgtctgccctcgctgtaacggcaccggcactatccgtgataacgaatcgctggca
ctttccattctgcgcctgatcgaagaagaagcgctgaaggaaaataccaaagaagttcac
gctatcgtgccagttcaggttgcctcttacctgctgaacgaaaaacgtgagtcggtgagc
gcaatcgaaaaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaa
accccacactactccgtactgcgtgtacgcaaaggcgaagaaacaccaaccctgagctac
ctgctgccgaaattgcacgaagaagagatggctcagccactggaagatgcgccgatggag
cgcaaacgtccggaacaaccggctctggcctcgttctctctggctgctgacgcgccgccg
cctgccgaagaacctgtggtggcacaggccgctactgccgctgtagtgaccaagccaagc
gccccaagcgctgccaaaccaggtctgttgggccgcctgttcggtggtttgaaagcgctg
ttcgccagtgaagaacaacctgttgttgaagccaaacctgccgttgaagcacctaaggcc
gaaggcaacggtgaaaaccgccgccaggatcgccgtggtcaacgccgtcagggctctggc
cgtaaagaacgtggtgaacgcggggaacgtggtgagcgtagcgatcgtcctgaacgtggc
gaacgcaaggaacgcggcgaaggccgtgacaatcgcgagcgagataaccgtgaaccacgt
gaaaatcgtgagccgcgcgacaatcgcagcgaaggccgtgaaacgcgtgaagtgcgcgat
gaacaacgccgtaacaaccgccgcaatacgccgcaggttgcagcaccggttgccgaggtg
ccacagtctgaagaagccgccaaggcacagcgtgaagagcagcaacaacgccgtgaccag
cgtgccgaacgccagcgccgtcgtcaggaagagaagcgccaggctcagcaggaagtagct
gcactggaaagtgtagacaccagcaccaacgttatcagcgatgaagatctggaagaacgc
cagcagcagaacatgcaacgtcgccagcgtcgtcctctgtcgcagaaagttcgcgtcctg
tccgcggaagaagaactgcatcgcgcagcggaagaactgctggcgcctaaagcaccggtt
gtgaaaacccaagacgcgaagccggctgtggaagaaaacagcgttaaactgctgccagaa
acccttgatgcaccggctgaagatgatgttcagggcgacaaccgtaatggcgaaaatggc
atgccacgccgttcacgccgctcaccacgtcatcttcgcgtgagcggtcaacgccgtcgc
cgttaccgtgatgagcgttaccctgcccagtcaccgatgccgctggccggggctttcgcc
tcaccggaaatggcttctggcaaggtatgggtcagttaccctgtaacacaaactgcgcaa
gtgattgaagaagttgaagttcagactgacgctaccgaaatcgctgccgacaacgtgatg
gcacaagaaaccgccagcgtagccgctccggttatcgctgaggctgccgcgcaaaccatc
gcaccggtagaaaccgctgaagttgtcattgcagaagaagcccagccggaagttgaaact
gttgcgccgatcattacggctcaattggagaaaactgctgcggtgcagcaggctgagatg
ccagtagttgaagaagcaaccgtggttgaagaaactactgcgactgaagctgccccggcg
gttgaagcaccgcctgttgtggaagtgactgctgctgttgtagagcctgtcgcagcgcca
gcgccagtcgtcgttgaagccgcacctgttcaggaagttgccgctccggtcgttgttgta
gaaaaagcgccggttgttcagcaaccagtacagatgcaagccgtgcaggatgtgctctat
aaacatatcgccacagcgccaatgaccaaggcccctgcgccggcttacgagccggaagag
cagaaaggcagtgattggcaacgcccttccttcaatttcgaaggtaaaggctcggcgggg
gggcatgctgcggtgaatcaagccacagctccggcaaccaaaccgcagccggttaacgaa
taa

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