KEGG   Sinocyclocheilus rhinocerous: 107721790Help
Entry
107721790         CDS       T04916                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03030  DNA replication
srx03410  Base excision repair
srx03420  Nucleotide excision repair
srx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:srx00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    107721790 (lig1)
   03410 Base excision repair
    107721790 (lig1)
   03420 Nucleotide excision repair
    107721790 (lig1)
   03430 Mismatch repair
    107721790 (lig1)
Enzymes [BR:srx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107721790 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     107721790 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107721790 (lig1)
DNA replication proteins [BR:srx03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107721790 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107721790 (lig1)
DNA repair and recombination proteins [BR:srx03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107721790 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     107721790 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     107721790 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 107721790
NCBI-ProteinID: XP_016385441
LinkDB All DBs
Position
Unknown
AA seq 977 aa AA seqDB search
MQRSIASFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGMQENDSPVKKVHKRSRAIIDSD
DEDQPIVKEQVPKQSEVQTAKPEKAASTVSPKTPITPTTPVTSSTSVAVVTPASSGTPGT
PTSASPSGIPKRKTARKHFPKRKLESRSDGEGTKEEENEVDGAQESKRARVESSPGKTDN
EMMEVEEKRADGKTVVEEQKGEDKAKSTVVEDDANNEMKEKDKSDIKQEKKINGENGKKE
KKEGKKEKEDSSPERVVKKEKNTEEEGGSAKKKPISSFFAPRKAAVKLEKEEQIEGEKKK
NGEISDAAEQKEKKSEKGMDSAVQSQYDPSRAHYNPVDHACWQKGQKVPYLAVARTFEKI
EEDSGRLKNIETLSNFLRSVILFSPDDLLCCVYLCLNQLGPAYQGLELGVGETVLMKAVA
QATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAGGVFNKLKEIANMSGNSA
MNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQEFPPA
VLDAGKGMSAENKRVWMEEKALILKQTYCEMPNYDAIIPVLLKEGIDQLPNHCKLTPGVP
LRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYP
DIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYA
FDLLYLNGKSLVREPLSKRKALLRESFEEKEGEFVFARSLDADNTEAIAEFLEQSVRDSC
EGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEAVGDTVDLCVIGAYLGKGKRAGSYGGFL
LACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLEAV
QVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQIADLYKK
QQQIQNQGKKQDLEDYY
NT seq 2934 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcatagcatctttctttcagccaatgaaaagcaaggaaaagagtgatgga
caggtcaaagcaaaaaccgaacctgtaaaaagtcctctcaaaattcagaatggcatgcag
gaaaatgattcacctgtaaagaaggttcataaacgcagtcgagcaatcatagacagtgat
gatgaagatcagccaatagtaaaagagcaggtgccaaaacagagtgaagttcaaacagca
aagccagagaaggctgcttccactgtatctccaaaaactcccataaccccaacgactcct
gtcacgtcgagtacctctgttgccgtggtaacccctgcttcctcaggtactccaggaact
ccgacatcagcatcgccgtcaggcattcccaaacgcaagactgcccgcaagcatttcccc
aagaggaagctggaaagcagaagtgatggagaggggacaaaagaggaggagaatgaggtc
gatggagcgcaggaaagtaagagagcacgagtagagtcttcacctggaaagacagacaac
gagatgatggaggtggaagagaagagagcagatgggaagactgttgtggaggaacagaaa
ggggaggataaagcaaaatcaaccgtagttgaggacgatgcaaacaatgagatgaaagaa
aaggataaaagtgacataaaacaggagaaaaagataaatggagaaaatgggaagaaagaa
aaaaaagaaggcaagaaagagaaggaagatagcagtcctgaacgagtggttaaaaaagaa
aaaaacacagaagaggaagggggatcggccaaaaagaaacctatcagcagcttttttgct
cccagaaaggcagctgtaaaactggaaaaagaggagcaaattgagggagaaaaaaagaag
aatggagagatctctgatgctgctgaacagaaagagaagaaaagtgaaaaggggatggat
tctgcagtccagagccagtatgatccctccagagcacattacaatcccgttgaccacgct
tgctggcagaagggccaaaaagtgccatatttggctgtcgctcgcacctttgagaagatt
gaagaggattcgggcaggctgaagaacattgaaacgctttccaactttctgcgatctgta
attctgttctctcccgatgacctgctatgctgtgtgtacctgtgtctgaatcagctcggc
cctgcatatcagggtctggagctgggtgttggggagaccgtcctgatgaaagccgtcgct
caagcaactgggcgacaactggacaaaatcaaggcggaggctcaggagaaaggtgacctg
ggattggttgctgaaagttcccgtagcaaccagagaatgatgtttgcaccggccaatctg
acagcagggggcgttttcaacaaactgaaagagattgctaacatgagtggaaactctgca
atgaataagaagattgacattattaaaggcctctttgtggcatgtcggttttctgaggct
cgatacattgtcaggtcactggctgggaagctgcggatcggattggctgagcagagcgtt
ctctcggctctcagtcaggctgtgtgtctgtcgcccccgggccaagagttcccaccggct
gtgctggatgcagggaaaggaatgagtgcagaaaacaagagagtgtggatggaagagaaa
gcactgatcctgaaacagacatactgtgagatgccaaattatgatgctatcattcctgta
ttgctgaaggagggcatagatcaactgcccaatcactgcaagctcaccccaggtgttccc
ctgcggcccatgttggctcacccgactaaaggggtcggtgaggtaatgaaacgttttgat
gaggcatctttcacctgcgagtataaatacgatggagagagagcccagatccatattctt
gagaatggagaggtgcgcatttttagccgaaaccaagaggacaacacaagcaaataccct
gatattatttcacgaatcccacaggtgaagaaagagaacgtacggtcctgtgttctggat
tcagaggcggtggcctgggacagagaaaagaaacagatccagccgtttcaggtcctcacc
acgaggaagaggaaggatgtggatgcatctgagatcaaggttcaggtgtgtgtgtacgcc
tttgatctgctgtacctcaacggaaagtctctggtgcgagagcctctaagcaaacgcaag
gctctgttacgggagagttttgaggaaaaagaaggggagtttgtttttgctcgatctctg
gacgctgacaacacggaggccatcgctgagtttctggagcagtctgtacgagattcttgt
gagggcctaatggtgaagacattggaaaagcatgcaacttatgagattgccaagcgctcc
cacaactggctcaagctgaagaaggactatctggaggctgttggagacacagtggatctg
tgcgtgattggtgcttatctggggaaggggaagagagcaggcagctatggaggatttcta
ctggcctgctacgatgaggagaacgaggagttccagtctgtctgcaagattggaacaggc
ttcaaagatgaagatctggagcaacattacaattttttaaaggagcacatcttgcctaaa
ccacgcccatattaccgtgtggaccaatcggcagagccggatgtctggctggaggcggta
caagtgtgggaggtgaaatgcgctgacctttcactgtctccagtctacaaggcagcaatg
ggattggtggacccagagaaaggcatttcactccgtttcccacggtacctcaggattaga
gatgacaaaaaaccagaggatgccaccacagggtcacagattgcagatctctacaagaag
cagcagcagattcaaaaccagggcaaaaaacaagatctggaagactactattga

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