Sinocyclocheilus rhinocerous: 107757981
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Entry
107757981 CDS
T04916
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107757981
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107757981
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107757981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107757981
NCBI-ProteinID:
XP_016431087
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MLDPEHKPEPRTKSLRNIDSTAGSYISQSEESSKMSTEVKSEVKGQTKKEPLQTLQSSVS
TLKNSTELTISMDTKPVEISNVYPTDILDTVYDASRTKSVKDSITAPSGSPRNLTNVTME
TSTGSASVNKVKSQEKNKEIRATSQPTTPMRKQPVAITQQMPFHQPEREEASTAMKESEQ
EQIKDTDETPQIRQDDLSYRSEQKAPVIEESETDDCYSGDIAACPVRPTTVPNTTTETHS
NQMHRNINREGGLVRTTGFRGPRGYRGPPGLSGPPGEKGDKGYAGVMGRTGRTGYRGPIG
PPGMPAIIVWYTSEEEWQALKRVKGLPGTLGPRGDPGPPGRIGPVGMPGPPGRPGPEGTA
GKDGEKGPPGTPGEDGPKGYAGEKGSKGELGEWGDLGEQGPQGTKERKGEMGPPGPRGPQ
GFMGPPGPPGQTGGLGFTGSPGPPGRTGPRGLKGVPGVNGPPGQLGEMGPRGPPGKPGEE
GPDGIIGIPGVPGPQGKPGGNGPPGQKGDPGDTGIEGDIGSPGPPGIKGANGNPGIHGPS
GDPGPPGLPGKQGFRGRGGRSGVQGEIGPTGPAGLPGPTGYDGPIGDPGREGKDGLKGER
GPPGIQGVPGTRGDKGRTGRGGFAGFLGPLGLQGVSGSRGQDGTHGAPGSVGPHGSDGDR
GPQGPRGLQGRSGASGIQGPVGKSGVKGREGSVGFHGSHGEKGKNGPEGPKGEPGQPGPR
GLPGEKGYKGPAGPQGNIGQWGETGLQGPVGNQGPRGPPGLHGVAGYPGKDGLPGPLGPP
GDKGNKGLRGASGLKGVAGIDGEEGPVGETGPVGPVGSKGLPGEKGKEGSFGDRGPKGIQ
GESGNRGPPGVKGPKGQEGSSGAPGQKGDPGSPGEKSQPGVRGHSGLVGKYGPGGNMGES
GEKGDKGLCGLVGATGTNGPPGSNGAIGLPGLPGKEGFVGKTGKHGPKGEPGVKGNPGGP
GKIGSIGVSGPSGKKGEPGTRGKMGPMDQPGAVGPRGLKGKPGSSGPPGEKGFKGQPGPK
GDIGFRGPPGKPGPSGSAVINLPASPSQGSEGPRGKPGPTGLIGPKRILGLQGEKGDVGQ
KGPKGHVGIRGLQGPIGPPGEKGKQGVPGYKGRPGSKGIKGEAGASGPSGSKGFPGSPF
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaccctgaacacaagcctgaacctcggaccaagagcttgagaaatatcgattct
acagcaggtagttacatttcgcagtctgaagagtcttccaagatgagcactgaggtcaaa
tcagaggtcaaaggtcagaccaaaaaggagcccttgcagacactacagtcatctgtctca
actctgaagaacagtacagagcttaccatttcgatggacacaaagccagtggaaatatca
aatgtctatccgactgatattttagatacagtctatgacgcgtcacggacaaaatctgtc
aaggattcaatcacagcgccaagtggttcacctcgaaacctgaccaacgtaaccatggaa
accagcaccgggagcgcctcagtcaataaagtaaagtcacaggagaagaataaagaaatc
agagcgactagtcaacccacgacaccgatgcgaaagcaacctgtagcaattactcagcaa
atgccttttcatcaacctgaaagagaggaagctagtactgcaatgaaagagagcgagcaa
gaacagattaaagatacagatgagactccacaaattagacaggatgatctcagttataga
agtgagcaaaaagcccctgtgattgaagaatcagagactgatgattgttattcaggtgat
attgctgcctgtccagttcgtcctaccactgtgccaaatacaacaacagagacccactcc
aatcagatgcacagaaacataaacagagaaggagggttagtacgcacaacgggtttcaga
ggcccaaggggatatcgaggcccacctggcttgtcaggtcctccaggtgaaaaaggagac
aaaggctacgcgggagtgatgggccggacgggccggacagggtacagaggaccgattgga
ccacccggcatgcctgctattatagtctggtacacatcagaagaagaatggcaagcactc
aagagagtgaagggattaccaggaactttgggaccacgtggagatcctggaccacccgga
agaataggtccagttggaatgccagggccacctggaagaccaggaccagagggcacagct
gggaaggacggggagaagggcccaccaggaacacctggggaggatggcccaaaaggttat
gcaggagagaaaggcagtaaaggggagctgggtgagtggggtgatcttggcgaacagggg
cctcagggaaccaaagaaagaaaaggagagatggggccacctggacctagaggaccacag
ggattcatgggcccacctggtccaccgggacagacaggggggcttgggttcactggatca
ccaggaccaccaggtcgcacaggaccgagagggttgaagggagttccaggcgtcaacgga
ccccctggacaacttggtgagatggggccaaggggaccacctggcaaaccaggagaggaa
gggcctgatggtattatcggtattcctggtgttcctggaccacagggaaaaccaggtggc
aatggaccaccaggtcaaaaaggagaccctggagatacaggaattgagggagacattggg
agtccaggaccaccgggtataaaaggtgccaatggaaatccaggaatacatggaccctca
ggtgatccaggtcctccggggttgccaggtaaacagggattcagaggcagaggagggcgg
tctggtgtacagggagagattggccctactggacctgctggtttaccagggcccacgggc
tatgatggtcctattggagatccggggagagagggaaaagatggacttaagggagagaga
ggcccccctggtatccaaggtgttcctggaacacgaggtgacaagggtcggactggccga
gggggatttgctggttttctaggacctttgggactgcagggtgtttcagggagtagagga
caggacggcactcacggagcacctggatctgttggaccacatggatcagatggagataga
ggacctcagggtccccggggtttacagggaaggagtggtgcatcaggaatccaaggtccc
gttggaaaaagtggtgtcaaaggcagagagggttcagtagggtttcatggcagtcatggg
gagaaggggaaaaatggccctgaggggcccaaaggagaacccggtcagccaggtcctcga
ggcctaccaggagagaagggctacaaaggacctgctggcccacaaggaaacataggccag
tggggtgagacaggtctgcaggggccggtaggaaatcaagggcccagaggaccacctggg
ctgcatggagtggctgggtacccaggtaaagatggactacctggacccctcggacctcca
ggagataagggcaataagggactgagaggagccagtggactgaagggagttgccggtatc
gatggtgaggagggcccagtgggtgaaactggaccagttggaccagtaggaagtaaaggc
ttgcctggtgagaagggtaaagaaggatcttttggtgatcgtggcccaaaaggaatccaa
ggagagagtggaaatcgaggaccacctggagtcaaaggaccaaaaggacaagaagggtcg
agtggtgcccctgggcagaagggagatcctggatcccctggtgaaaaaagtcagccaggt
gtgagaggtcactcgggtttggttggaaaatacggtcctggggggaacatgggagaatct
ggtgaaaaaggcgacaaaggtctatgtggacttgttggcgcgacaggaacaaatgggcct
ccaggttcaaatggtgctattgggttaccgggtttgccaggaaaagaaggatttgttgga
aaaactggaaaacatggaccaaaaggagagcctggagttaaagggaatccaggcggccct
gggaagattggatcaattggtgtttcaggtccaagtgggaagaaaggagagcctggaaca
agaggcaaaatgggaccaatggatcagccaggagctgtgggtcctcgtggactaaaggga
aaaccaggatcttcaggacctccaggggaaaaaggattcaagggtcaaccagggccaaaa
ggtgacattggattccgaggacctccagggaaaccaggtccttcaggtagtgctgtaatc
aatttaccagcctctccatcacagggctctgaaggacccagagggaaaccagggcccacc
gggctgataggaccaaagaggattctgggacttcaaggtgaaaagggagatgtcggacaa
aaaggaccaaagggccatgttggtattagaggattgcaagggcccattggaccaccagga
gaaaagggaaagcaaggtgttccagggtacaagggacgtcctgggtcaaaaggtataaag
ggcgaagctggtgctagtgggccttctggtagcaaaggattccctggttcacctttctga
DBGET
integrated database retrieval system