Serratia plymuthica S13: M621_01210
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Entry
M621_01210 CDS
T02716
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M621_01210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sry03021
]
M621_01210
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_01210
Enzymes [BR:
sry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M621_01210
Transcription machinery [BR:
sry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M621_01210
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M621_01210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGP42640
UniProt:
S4YDR6
LinkDB
All DBs
Position
268221..272444
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIVDTTVGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGITMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNVKFVMNATGKLVITSRNTELKLIDEFGRTKERYKVPYGSVMGKGDGAEVNGGETVANW
DPHTMPVITEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRVKIANRQLAAAGKIEATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEVPV
VPQVSAEEATANLAELLNAGNLGGNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagatatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcttaaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccaaaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcttcaccgactgcgcacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgttggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagccattcaggccctgttgaaaaacatggatctggaagcggaatgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtctggcaacaagccagagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggatggtggccgtttc
gcgacttcagatctgaacgatctgtaccgccgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggccgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccacgaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggacatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggcaaggcaatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgtacacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgagcggcccgaaagaagcggaacgtatttaccgcgccggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtatcactgaagagatcaaaaacaccgaa
ggcgagtctgtacatcagacttcgatcgtcgacactaccgttggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgtacgcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacttgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccaaatcatgtataccggttttgcctatgctgcccgttcaggcgcttcagtaggt
atcgatgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgaaatccaggagcagttccagtctggtttggtcaccgccggtgaacgttacaac
aaagtgatcgatatctgggctgcggcgaacgaacgtgttgctaaagcgatgatggaaaac
ctgtcggttgaagacgtggttaaccgtgacggcgttgtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggttccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtggttaccgaagacgactgtggtactcacaacggcatc
acgatgactccggttatcgaaggtggcgacgttaaagagccactgcgtgaacgcgttctg
ggccgtgtaactgcagaagatgtcatcaagccgggtacggcggacattctggttccacgc
aacacgctgctgcatgagaagacctgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtagttagctgtgaaaccgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggcgaagctatcggcgttatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtacgctgaagctg
agcaatgtgaagttcgttatgaacgccacaggcaagctggtgatcacctctcgtaacacc
gaactgaagttgatcgacgaattcggccgtaccaaagaacgctataaagtgccttacggt
tctgtcatgggcaaaggtgacggtgcagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccagttatcaccgaagtgagtggtttcattcgctttgctgatatg
gttgatggccagaccattactcgccagaccgacgaactgaccggtttgtcttctctggtc
gttctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtgcagttggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggacctgttcgaagctcgtcgtccgaaagagccggcaatcctggctgagatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtaatctctccgctg
gacggcagcgacgcatacgaagagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggcgaaattgtggagcgtggcgacgttgtttctgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttagtgctggtagcaccgagttcctggaaggcgagcaggct
gaagtgtctcgcgttaagattgccaaccgtcaacttgctgccgcaggcaaaatcgaggca
accttctcacgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgcagcatcgttccaggaaacgacgcgcgttctgaccgaagcggctgttgccggtaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtatgcgccgtaaagcacagggtgaagtgccggtt
gttccgcaggtaagcgcggaagaagcgacagctaacctggctgaattgctgaacgcaggt
aacctgggcggtaacgacgagtaa
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integrated database retrieval system
