Streptococcus salivarius HSISS4: HSISS4_01681
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Entry
HSISS4_01681 CDS
T04634
Name
(GenBank) Ribonuclease J1 (endonuclease and 5' exonuclease)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssah
Streptococcus salivarius HSISS4
Pathway
ssah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HSISS4_01681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssah03019
]
HSISS4_01681
Messenger RNA biogenesis [BR:
ssah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HSISS4_01681
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
SIS_2
Motif
Other DBs
NCBI-ProteinID:
ALR80693
UniProt:
A0A074IYH0
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Position
1880108..1881790
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AA seq
560 aa
AA seq
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MASKINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDY
SYIVENVDRVKALVITHGHEDHIGGIPFLLKQANIPIYAGPLALALIKGKLEEHGLLRDA
QLYEINANTELTFKNMSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPAD
LHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFR
LQQAAEAAVKTGRKIVVFGRSMEKAIVNGVELGYIKVPKGTIIDPSEMKNYHASEILIMC
TGSQGEPMAALARIANGMHRQVTLQPGDTVIFSSSPIPGNTTSVNRLINTIQEAGVDVIH
GKINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKVHAGLAVDCGVPKDNIFIME
NGDVLALTKDSARRAGHFNAQDIYVDGNGIGDIGAAVLRDRRDLSEDGVVLAVATVDFKS
KMILAGPDILSRGFIYMRESGDLIRESQRILFNAIRIALKNKDASIQSVNGAIVNALRPF
LYEKTEREPIIIPMILTPDK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaatcaatctaaaacctgaagaagttggggtttatgcgattggtggtttg
ggggaaatcggtaaaaacacctatggtattgaataccaagatgagattatcatcgtcgat
gcgggtattaaattccccgaagacgatcttctcggaatcgactatgtcatcccagactat
tcttacatcgttgaaaacgttgatcgtgtaaaggcacttgtcattacccacggtcatgaa
gaccatattggtgggattcccttccttcttaaacaggcaaatatcccaatttatgcagga
ccgcttgctcttgctcttatcaaaggaaaattggaagaacacggactacttcgtgacgca
caactctacgaaattaatgctaatacagagcttactttcaaaaatatgagcgtgaccttc
ttccgcactactcactcaattccagaacctctcggtattgtcatccatacacctcaaggt
aaaattgtgtgtaccggtgactttaagtttgacttcaccccagtaggggaaccagcagac
cttcaccgtatggctgcacttggtgaggaaggcgttctttgcctcctctcagactcaacc
aatgctgaagtaccaactttcactaattccgagaaggttgttggccaatccattatgaaa
attattgaaggaatccacggacgtattattttcgcctcatttgcctcaaacattttccgt
cttcaacaagctgccgaagccgctgtaaaaactggccgtaagattgttgtcttcggacgt
tctatggaaaaagccattgtcaatggagttgaactaggttacatcaaggttccaaaaggg
actatcattgatcctagtgagatgaaaaactatcatgccagtgaaattcttatcatgtgt
accggttctcaaggggagcctatggcggcccttgcacgtatcgccaatggtatgcaccgc
caagtgacactacaacctggtgacactgtcatcttctcatctagtcctattccagggaac
accactagcgttaaccgtctgattaataccattcaagaagctggtgttgatgttatccac
ggtaaaatcaacaatatccatacctctggacacggtggtcaacaagagcaaaaactaatg
cttcgtttgataaaaccaaaattcttcatgcctgttcacggtgaataccgcatgcagaaa
gtccacgcaggtcttgctgttgattgtggcgttccaaaagataatatcttcattatggaa
aatggtgatgtcttagccctaacaaaagactctgcgcgtcgtgcaggtcacttcaatgct
caagatatttatgttgatggtaatggcattggggatatcggagctgccgttcttcgtgat
cgtcgtgatctttctgaagatggtgtcgtacttgccgtagctactgttgacttcaagtct
aagatgattctagctggtccagacatcctcagtcgtggcttcatctatatgcgtgaatct
ggcgatcttatccgcgaaagccaacgcattctattcaatgctattcgtatcgctcttaag
aataaagatgctagcatccaatctgttaacggagctatcgtcaatgctttacgcccattc
ctatatgaaaaaacagaacgtgaaccaatcattattccaatgattctcacacctgataaa
taa
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