KEGG   Sus scrofa (pig): 100127138
Entry
100127138         CDS       T01009                                 
Symbol
F11R
Name
(RefSeq) junctional adhesion molecule A precursor
  KO
K06089  junctional adhesion molecule 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04514  Cell adhesion molecules
ssc04530  Tight junction
ssc04670  Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    100127138 (F11R)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    100127138 (F11R)
 09150 Organismal Systems
  09151 Immune system
   04670 Leukocyte transendothelial migration
    100127138 (F11R)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ssc04090]
    100127138 (F11R)
CD molecules [BR:ssc04090]
 Proteins
  100127138 (F11R)
SSDB
Motif
Pfam: Ig_3 ig I-set Ig_2 V-set C1-set C2-set_2 V-set_CD47 Ig_6 Adeno_E3_CR1 Ig_C17orf99 Invasin_D3 DUF5626
Other DBs
NCBI-GeneID: 100127138
NCBI-ProteinID: NP_001121916
Ensembl: ENSSSCG00000006369
Vega: OTTSUSG00000002336
UniProt: B2ZI35 A0A8D0IEG6
LinkDB
Position
4:89425101..89447889
AA seq 298 aa
MGTKAKVGRKQLLLFTSVILCSLTLGRGAVYTSEPEVRVAENKPAKLSCSYSGFSSPRVE
WKFTHGDITSLVCYNNKITASYENRVTFSASGITFHSVTRKDTGTYTCMVSDEGGNTYGE
VTVNLIVLVPPSKPTISVPSSATIGNRAVLTCSEKDGSPPSEYFWFKDGVLMPTEPKSNR
AFINSSYSLNPKTGELIFDPVSASDAGDYTCEAQNGYGSPMRSDTVHMEAAELNVGGIVA
AVLVTLILLGVLIFGIWFAYSRGYFDRAKKGTSSKKVIYSQPTARSEGEFRQTSSFLV
NT seq 897 nt   +upstreamnt  +downstreamnt
atggggacaaaggcgaaagtcgggaggaaacaattacttctcttcacatcagtgatcttg
tgctccctgacgttgggcaggggtgcagtgtacacttctgaaccagaagtcagagttgct
gagaacaaacctgccaagctgtcctgctcctactccgggttctcctctccccgtgtggag
tggaaatttacccatggcgacatcaccagcctcgtctgctataacaacaagatcacagct
tcctatgagaaccgagttaccttctcggctagtggcatcaccttccattctgtgaccagg
aaagacacagggacgtatacttgtatggtctctgacgaaggcggcaacacctacggggaa
gtcactgttaacctcattgtgcttgtgcctccatcgaagcctacaatcagtgttccctcc
tctgctaccatcgggaaccgggctgtgctgacctgctcagagaaagatggttccccaccc
tctgaatacttctggttcaaggatggggtattgatgcctacagagcccaagagcaaccgt
gccttcatcaactcttcctatagcctgaatccgaagacaggggagctgatctttgatcct
gtgtcggcctctgatgctggagattacacttgtgaggcacagaatgggtatgggtcaccc
atgagatcagatactgtgcacatggaagctgcggaactgaatgtgggcggcatcgtggca
gctgtccttgtcacactcattctcctcggagtgttgatttttggcatctggttcgcctac
agccgcggctactttgacagagcaaagaaagggacttccagtaagaaggtgatttacagc
caacccactgctcgaagtgaaggggaattcagacagacctcatcattcttggtgtga

KEGG   Sus scrofa (pig): 100517006
Entry
100517006         CDS       T01009                                 
Symbol
IGSF5
Name
(RefSeq) immunoglobulin superfamily member 5 isoform X2
  KO
K06786  junctional adhesion molecule 4
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04530  Tight junction
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    100517006 (IGSF5)
SSDB
Motif
Pfam: Ig_3 I-set ig Shisa WBP-1 Cadherin_C_2 MAP17 Mucin EphA2_TM V-set TMIE DUF6568 Rhabdo_glycop Orthoreo_P10 Tweety DUF2140 ETRAMP
Other DBs
NCBI-GeneID: 100517006
NCBI-ProteinID: XP_005657215
Ensembl: ENSSSCG00000012071
UniProt: A0A287A5B2
LinkDB
Position
13:203325385..203372361
AA seq 366 aa
MEGSCRGVLAALVVLAGLAACGSGNEILEGPRNVTVVKGSEARFNCTISQGWKLIMWALK
GTVVLSVTPTEPIITNDRFTSASYEEGGNFISEMIIHDVQLSDAGQVKCSLQNSDRDGSA
FLSVQVMGALLIPGGSLVVLAEEPCNVTCRAWGWTPLPDISWEIGAPVSHSSYDSAPEPD
DLQSAVSVLALTPLGSGSVTCVADMKGLPLQESVTVNLTVVQPPLGSVDKPGTSLPTWAI
ALLAVSLSLLSILIIVLIIIFCCCCASRREKEESSYQSQIRKSASVKTNTETFQTKSGKE
NYGYSSDEPRTTTSLPPKGSESSVPEQRGSRPPHQGLDHRQPGPASRPQVSFNVASPKKV
RNATLV
NT seq 1101 nt   +upstreamnt  +downstreamnt
atggagggcagctgccgaggcgtgctggctgcgctggtcgttctggctgggctggcagct
tgtggatccggcaatgaaatcttagagggtcccaggaacgtcacggtggtgaagggctcg
gaggctcgcttcaactgcaccatctcccagggctggaagctcatcatgtgggctctgaaa
ggcacggtggttctgagcgtcacgcccaccgagcccatcatcaccaacgaccgattcacg
tctgcaagttatgaagagggcggtaacttcatctctgagatgatcatccatgacgtgcag
ctcagtgatgccgggcaggtcaaatgcagcctccagaacagtgaccgggatggatccgct
ttcctttccgtccaagtcatgggggcgctgctcattcccggaggcagcctcgtagtcctt
gcggaagagccttgtaatgtgacctgccgcgcttggggctggaccccactcccggatatt
tcctgggagatcggggctcccgtgagccattcgagctatgactctgctccggagcccgat
gaccttcaaagtgcagtgagtgtcctggctctcacgccactgggcagtggctctgtgact
tgtgtcgcggacatgaaggggctgcccctgcaagagtccgtaactgtaaatcttacggtg
gttcagcctcccttgggcagtgttgataaaccaggtacgtccttgcctacctgggccata
gctctacttgcagtctcactgtcattgctttccatcctgataattgttctgattataata
ttctgctgctgttgtgcctccaggagagagaaagaagagtctagttatcaaagtcaaata
aggaaatctgcaagtgtgaagaccaacacagaaacttttcagacaaaaagtggaaaagaa
aactatggctacagctcagacgagccaaggaccacaacttctctgcctccgaagggctcc
gaatccagtgttcccgagcagcgcggcagcaggccacctcaccagggactggatcaccgc
cagccgggcccagcaagtcgtccacaggtgtcctttaacgtggccagtcctaagaaggtc
aggaatgcgactttggtatag

KEGG   Sus scrofa (pig): 100520043
Entry
100520043         CDS       T01009                                 
Symbol
JAM3
Name
(RefSeq) junctional adhesion molecule C isoform X1
  KO
K06785  junctional adhesion molecule 3
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04514  Cell adhesion molecules
ssc04530  Tight junction
ssc04670  Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    100520043 (JAM3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    100520043 (JAM3)
 09150 Organismal Systems
  09151 Immune system
   04670 Leukocyte transendothelial migration
    100520043 (JAM3)
SSDB
Motif
Pfam: Ig_3 I-set ig V-set Ig_2 C2-set_2 Ig_6
Other DBs
NCBI-GeneID: 100520043
NCBI-ProteinID: XP_003130135
Ensembl: ENSSSCG00000015256
UniProt: A0A480LHD7 A0A4X1V9K7
LinkDB
Position
9:60629245..60738979
AA seq 301 aa
MALRQWPALVLLLLLLGCLTGAVNLKSSNRNPVVQEFESVELSCIITDSQTNDPRIEWKK
IQDEQTSYVFFDNKIQGDLTGRAELLGKTSLKIWNVTRTDSALYRCEVVARNDRKEIDEI
VIELTVQVKPVPPACRVPRAVPVGKAATLSCQEGEGYPRPHYSWYRNDVPLPTDSRANPR
FRNSSFLLNPETGTLVFNAVHKEDSGQYYCIASNDAGSARCEEQDMEVYDLNISGIIGGV
LVVLTVLALITAGICCAYRRGYFINNKQNGESYKNPGKPDGVNYIRTDEEGDFRHKSSFV
I
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcgctgaggcagtggcccgcgctggtcctgctgctgcttctactgggctgcttgaca
ggggccgtgaatctcaaatccagcaaccgaaacccagtggtacaggaatttgaaagtgtg
gaactctcttgtatcattacggattcacagacaaatgaccccaggattgaatggaagaaa
attcaagatgaacaaacctcatatgtgttttttgacaacaaaattcagggagacctgact
ggccgtgcagaactactgggtaaaacctctctgaagatctggaatgtgacccggacagac
tcagccctttaccgctgtgaggtggttgctcgaaacgaccgcaaggagattgacgagatt
gtcatcgagttaactgtgcaagtgaagccggtgcctccggcatgcagggtgccgcgggct
gtgccggtgggcaaggccgccacgctgtcctgccaggagggcgagggctacccacggccg
cactacagctggtaccgcaatgatgtgccgctgcccacggattccagagccaaccccaga
ttccgaaattcctctttcctcttaaaccctgaaacaggcactctggtgttcaacgctgtc
cacaaggaggactcaggccagtactactgcatcgcctccaacgatgcgggctcggcccgc
tgcgaggagcaggacatggaagtgtatgatctgaacatcagcgggatcattgggggggtc
ctggttgtcctgaccgtgctggccctgatcacagcgggcatctgctgtgcgtacagacgt
gggtacttcatcaacaataagcagaacggtgaaagctacaagaacccagggaagccggat
ggagtgaactatattaggacggatgaggagggcgacttcagacacaaatcctccttcgtg
atctag

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