Sus scrofa (pig): 100156689
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Entry
100156689 CDS
T01009
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100156689 (COL12A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssc00535
]
100156689 (COL12A1)
Proteoglycans [BR:
ssc00535
]
Extracellular matrix (ECM) proteoglycans
Others
100156689 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
100156689
NCBI-ProteinID:
XP_013848273
LinkDB
All DBs
Position
1:90744409..90875127
Genome browser
AA seq
3120 aa
AA seq
DB search
MRTRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPADPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSELIPEVEYVVTITSYDEVEESVPVIGQLTIQTGDSKKK
PGEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRV
GVVQYSSDTRTEFNLNQFYQRDELLAAIKKIPYKGGNTMTGDAIDFLIKNTFTESAGARV
GFPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNV
ANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLIATEVSSKYIKLSWTPSPS
PVTGYKVLLTPMTTGSRQHALSVGPQTTMLSVRDLSADTEYQISVSAMKGLTASEPISIM
EKTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQI
SLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRS
NVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTV
EDFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYSFNTSWSPAGENV
FSYHITYKEATEDGEITVVEPASSTSVVLSNLKPETLYLVNVTAEYEDGFSIPLAGQETT
AEVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVTGGESKEVTTPANQRRRTL
ENLTPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVTDPTTSTMKLSWSGAPG
KVKQYLVTYTPVAGGDTQEVTVRGDTTNTILRGLKEGTNYALSVTALYASGAGEALFGEG
TTLEERGSPQGLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIEAGEKSLPGDAIY
TVIENLQPETKYRVSVFATYSSGEGEPVSGEATTELSEDAKTLKVDEETENTMRVTWKPA
PGKVLNYRVVYRPRGGGRQMVAKVPPAVTSTVLKRLQPQTTYDITVLPIYKAGEGKLRQG
SGTTASRFKSPRNLRTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDNGRLGELVVGPYD
NTVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEAD
IVLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWQLNAHRDK
KSLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAP
SKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSV
KGPGDLEAPSNLVISERTHRSLRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLESST
VLKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGSTAMRVQWQPVGG
ATGYALSYEPINATQPATPKEMRVEPTVNDVQLSDLFPNTEYKVTVQASLYDLTSEPVTA
REVTLPLPSPRDLKLRDVTHSTMNVLWEPAPGQVRKYVVRYKTPEEDFKEVEVDRSQTST
PLKDLFSQTLYTVSVSAVYDEGESPPVTAQDTTRTVPAPTNLWISEVTPESFRGTWDHGA
SDVSLYRITWAPSGSTDKMETILNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLIG
SERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQ
TTTVGGRQNSVLLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPST
STLNVRWDHAEGSPRQYKLFYAMAGGPEEMVPIPGNTNYAILRNLQPDTPYTITVVPVYS
EGDGGRTSDTGRTLVRGVATNIQVYNPTPNSLDVRWDPAPGPVQQYRLVYSPQAGTRPSE
SIVVPGNTRMVTLERLVPDTPYSVNIVALYADGEGDPSPAQGRTLPRSGPRNLRVFGETT
NSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQSDTPYKITVIAV
YEDGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
MEVFVGEVTSYTLHNLNPSTTYDVNVYAQYDSGLSAPLADQGTTLYLNVTDLKTYQVGWD
TFCVRWSAHRAATSYRLKLSPSDGTRGQEITVRGSETSHCFTGLSPDNDYGVTVFVQTPN
LEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPAREVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIQYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALIIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFVNQPTAELHPNGLPPSYT
IILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTD
EVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKNIQEAGNITTDGYEILGKLLKGERKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGISGAVGPPGPRGDMGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPG
LPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGPSGLKGEKGDRGDVASHNMMRAVARQVCEQLISGQMSRFNQMLNQIPNDYHSSR
NQPGPPGPPGPPGSVGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGIGSPGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASVPYNGQG
YPEPYVPEGGAYLPEREPFIVPVEPERTAEEYEDYGADEPAHERPPHARWRRALPRGPWQ
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccaggcttcccccagcgctcgccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgacccaccttcagacttgaattttaaaattatagatgaaaatact
gttcatatgtcatgggcaagaccggctgatccaattgtgggttacagaataacagtggac
cctacaacggatgggcctactaaagaatttacccttgcagctagtaccactgaaacctta
ttatcagagcttatacctgaagttgaatatgtggtgacaatcacttcatatgatgaagtg
gaagaaagtgtaccagttataggccagctaacaattcaaacaggtgactcaaagaagaag
ccaggagagaagaaacctggaaaaacagagattcaaaaatgctctgtcagcgcctggact
gatttagtgtttcttgtggatggctcatggagtgtgggaagaaataatttcaagtacatt
ttagacttcattgctgctcttgtgtctgcctttgacattggggaggagaagactagggtt
ggagtggttcagtacagctctgatactaggacggagtttaacctaaatcagttctaccag
agggatgagctgcttgctgcgattaaaaaaatcccctacaaaggtggcaacacaatgaca
ggggatgccattgatttcttaattaaaaatactttcacggaatctgctggagcaagagtc
ggctttcccaaagtagcgattattattacagatggcaaatcccaggacgaagtggaaatt
ccagcaagagagcttcgaaacattggggttgaagttttctctttgggcattaaagctgca
gatgcaaaagaactcaaacaaatcgcctccacaccatcactcaatcatgtttttaatgtg
gccaactttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggt
gtggatgaacagcttggtgaattggtcagtggagaagaagttattgaaccgccttcaaat
ctgattgccacggaagtctcgtcaaagtacattaagctaagttggactccatctccaagc
ccggtcaccggatataaagtcctcctaacccccatgaccacaggaagcagacagcacgct
ctgagtgtggggcctcaaacgactatgcttagtgtccgtgacctctcggcggacacagaa
taccagatcagtgtttctgccatgaagggattgacagccagtgaacccatttctatcatg
gagaagactcagcctatgaaggttcaagtggaatgctcgcgtggtgtggatataaaagct
gatattgtgtttttggttgatggttcctatagcatcgggatcgcaaactttgttaaagtt
agagcctttttggaagttcttgtaaaaagttttgagatttcaccaaatagggtacagata
agtcttgtccagtatagccgggatcctcatactgagttcactttgaagaaattcaccaaa
gttgaagatatcattgaagcaataaacaccttcccctacagaggagggtctaccaacacc
gggaaagcaatgacttacgtcagagagaaaatatttgtgccgagcaagggttcaagaagc
aatgtaccaaaggtcatgattcttatcacggatggaaaatcttcagatgctttcagagac
cctgctataaaactaaggaattcagatgttgaaatctttgcagttggtgtgaaggatgca
gttcgctcagaattagaagctattgcctctcctcctgctgagacccatgtgttcacagtg
gaagattttgatgcttttcagaggatatcttttgaactcacacagtctatctgcctgaga
attgagcaagaattggcagctataaagaagaaagcttatgtgcctccaaaggatcttagt
ttttctgaggtgacctcctacagtttcaacaccagttggtctcctgctggagaaaatgtt
ttttcataccacatcacctacaaggaggctacagaggatggcgaaatcacggtggtggag
ccagcctcgagcaccagtgttgtcctcagcaatctgaagccagagaccctgtacttggtc
aacgtgaccgcagagtatgaagatggcttcagcatccccctagctggacaggagaccacg
gcagaagtcaaaggagcacctcgaaacctaaaggtgacggatgaaactacggatagtttt
aaaattacctggactcaagctccagggagagtcttaaggtatcggattatctataggcca
gttactggtggagaaagcaaagaggtcaccaccccagccaatcagaggaggcggacactg
gagaacctgactccagacacaaaatacgaagtatctgtaattcctgaatatttctcggga
cctggcactccgctgactgggaatgcagccactgaagaagttagagggaacccaagagac
ttacgagtcactgaccctacaacatcaactatgaaattatcttggagtggggcgccagga
aaagtgaaacagtacctcgtcacatatacgccggtggcaggaggtgacactcaagaggtc
actgttcggggagatacaaccaatacgatactgagaggattaaaagaagggacgaattat
gccttgtctgtgacagccttgtatgcgtccggggctggagaagctcttttcggagaagga
acgacacttgaagagcgtggttcacctcagggtttggttaccaaagacatcactgacaca
tccattggtgcttactggacatctgctcctggaatggttcgaggttatagggtctcgtgg
aaatcactctatgatgatattgaggctggagagaagagtcttcctggagatgccatttac
actgtgatagaaaacctgcagccagagaccaaatacagagtttcagtatttgcaacttac
agcagtggagaaggagaacctgtgagtggagaagccacaactgaattatctgaagatgca
aaaaccttgaaagtggacgaagaaacagaaaacaccatgagagttacctggaaaccggca
cctgggaaagtcctgaactatcgtgttgtgtatcgaccccgtgggggtgggaggcagatg
gtggctaaagtgccacctgcagtcacctcaacagtgttgaagcgacttcagccccagacc
acgtatgacatcacagtactcccaatttacaaggcaggagaaggaaaacttaggcaagga
tcaggaacgacagcttctcgatttaagtcacccagaaacctcagaacatctgacccaacc
atgtcaagcttccgggtgacctgggagcctgcacctggggaggtgaagggttacaaggtc
acatttcaccccacgggggataatggaagactgggggagctggtggttggaccctatgac
aacacggtcgttttggaggaacttagggcaggtaccacctataaagtaaatgtttttgga
atgttcgatggaggagaaagttcaccacttgttgggcaagaaatgacaaccctttctgac
acaactgtaatgccaattttatcttctgggatggaatgtcttacccgggctgaagcagac
attgtgttgctggtggatggatcatggagcattggccgggcgaactttagaactgtgagg
agcttcatttctcgtatcgtggaagtctttgagattggtcccaagagagtgcagattgct
cttgctcagtatagcggcgaccccagaacagagtggcagttaaatgctcatagagacaag
aagagcttgttgcaggctgtggccaacttaccctacaaaggaggcaataccctcacgggc
atggctttgaatttcattcgccaacagagctttaagacccaagctggcatgaggccccga
gctcgaaaaattggagttctcatcactgatggaaaatctcaagatgacgttgaggcacct
tctaagaaactgaaggatgaaggcgtggagctctttgctattggtattaaaaatgctgat
gaagttgagttaaagatgattgcaacagatcccgatgatacccatgcctacaacgtggca
gattttgagtcactttccaggatcgtggatgacctcaccatcaacttgtgtaacagtgtc
aaaggcccaggtgacttggaagcaccttctaacctagtgatttctgagaggactcaccgt
tctttgagagtgagctggacgcccccttctgacagcgtggataggtacaaagtggaatat
tacccagtgtccggagggaaacgtcaagaattttatgtaagccgattggagagtagcacg
gtactgaaagatctgaagcctgaaactgagtatgttgtcaatgtgtattctgtggtagaa
gatgaatacagtgagcctctgaagggcacagaaaaaaccttgccggtccctgtagtcagc
ctgaacatttatgacgttggctcaactgccatgcgagtgcagtggcagccagtgggcggg
gctactggctatgccttgtcctatgaacccatcaacgccacacaaccggccacacccaag
gagatgcgtgtggaaccaacagtgaatgatgtgcagctgagtgacctctttcccaacact
gagtacaaggtcacggtccaggcctctctgtatgacctcaccagcgaaccagtcactgcg
agggaggtcaccttgcctttgcccagtcctcgagatctgaaactcagagacgtgactcac
agcaccatgaatgtcttatgggaacctgcgccgggacaagtgcgtaaatacgttgtccgc
tacaaaacaccagaagaggatttcaaagaggtagaggtggacaggtcacagaccagtacg
cctctcaaagacctcttctcgcaaaccctgtacactgtcagcgtttctgctgtgtatgat
gaaggggagtctccccctgtgactgctcaagacaccacccgcactgtgccagctccaaca
aacctatggatctctgaagtaacgccagagagtttcagaggcacttgggatcatggagct
tccgatgtatcgctctacagaatcacctgggcaccttctggaagcacagataagatggag
accatcctgaatggagatgagaatactttggtgtttgaaaacctgaacccgaacactctc
tatgaagtgtctgtgactgccatctaccctgatgagtcagaaagtgatgatctgattggc
agcgagcgcacactgcgtttgatacccttaacaacacaagctcccaaaagtggcccacga
aaccttcaggtgtataatgcaacatccaacagcttgactgttaagtgggatcctgctagt
ggtcgcgtgcagaagtaccgaatcacctatcagccttcaacaggggaaggcaatgaacag
acgaccacggtgggaggacgacagaacagtgtgctcctgcagaagctgaagcccgacaca
ccttacacaatcacggtgtcctcactgtatcctgatggggaaggcggccgcatgactgga
agaggcaagaccaaacccttgaatactgtgaggaacctcagagtgtatgacccttccacc
agcactttgaacgttcgctgggaccatgcagagggcagtcctcgccagtacaagctcttc
tatgcgatggcaggcggtccagaggaaatggtaccaatccctgggaataccaattatgcc
attcttaggaacctgcagccggataccccatacaccattacagtagttcccgtttattcg
gaaggtgatggaggacgcacatcagatactggcaggacgttggtaagaggggtggcaaca
aacatccaagtgtacaatccaacgccaaacagcctggacgtccgctgggacccagcgcca
gggcccgtgcagcagtatcgccttgtgtattctccccaggccggcactcgaccctcagag
tctattgtggtgccaggaaacacccgcatggtgaccttggaacggctggttccggacacc
ccctattctgtgaacatcgtggccctctacgcggatggggagggtgatcccagccctgcc
cagggacgaacattgccacgaagtggaccaagaaacctgagagtctttggggagacaacc
aacagtctctcggtagcctgggaccatgcagatgggccagtgcagcagtacaggatcatc
tattcccctactgtcggtgatccgattgatgaatataccacagtcccaggcagaagaaat
aatgtaatactacagcccctgcagtctgataccccgtataaaattactgttattgctgtt
tatgaagatggagatggaggccatttgacaggaaatggaagaactgtgggattacttcct
cctcagaacatacacatctctgacgagtggtatacgagattcagggtgtcctgggatcct
tcaccctctccagtccttggatataaaattgtgtacaagccagtgggttccaacgagccc
atggaagtctttgttggagaagtgacatcatacacgttgcacaatctcaaccccagcacc
acctatgacgtcaatgtgtatgctcagtatgattctggactcagcgcccctctggcggac
cagggcactacactgtatttgaatgtgacagatctgaaaacttaccaggttgggtgggac
actttctgtgtcaggtggtcagctcatcgggcagccacttcctacaggctgaaactaagc
ccttcagatggaacgagagggcaggaaattacagtgcgaggatcagaaaccagccactgc
tttactggcctgtcaccagacaatgattatggtgtcactgtctttgtgcagacaccaaat
cttgaaggacccggagtctctgtcaaagagcacactactgtaaaaccaacagaagcccct
acagagccacccacacctcctccacctccaacgattccacctgcccgtgaagtatgcaag
ggggccaaggcagatattgtgttcttgactgatgcctcttggagtatcggggatgataat
tttaacaaagtggtaaaatttatcttcaatactgtgggggcctttgatgaaatcagtcct
gctggaattcaggtctcatttgtgcagtacagtgacgaggtcaagtctgagtttaagctg
aacacctacaatgacaaggctctggcccttggagccctccagaatattcagtaccgagga
ggaaacacaagaacaggcaaggctctcacgtttattaaggagaaggtcttgacctgggag
agtgggatgaggaagaatgtccccaaggtgctggtggtggttacggatggtcggtcccag
gatgaggtcaagaaggcagctttgatcatccagcagtcagggttcagtgtctttgtagtt
ggtgtggccgacgtcgactacaatgaacttgccaacatcgccagcaaaccaagtgagcgg
catgtgttcatcgtggatgacttcgaatcttttgagaagatagaggacaacctcatcacg
tttgtctgtgaaactgccacttcaagttgtcctcttatttatctggatggctacacctca
ccgggttttaagatgcttgaagcgtacaacctgacagaaaagaattttgcctccgtacaa
ggtgtctctttggagtcagggtctttccccagctactcagcttacaggcttcagaagaac
gcctttgtgaatcagcctacagcagaactacatccaaatggactccctccttcatatacg
attatattattattcagacttctcccagaaactcccagtgacccttttgcaatctggcaa
atcacagacagagattacaaaccacaagttggagtgattgcagatccttctagcaagacg
ttatcattctttaacaaggatacaaggggtgaggtgcaaactgttacatttgacacagat
gaagtgaagacattattttatggaagttttcataaggttcatattgtagtgacctcaaaa
agtgttaagatttatatcgactgctatgaaattatagaaaagaacatccaggaagctgga
aatatcacaactgatggttatgaaattcttggaaaactacttaaaggggagaggaaatca
gccacattccaaatccagaactttgatatcgtctgtagtccagtgtggaccagtagagac
agatgctgtgatattccctccaggagagatgaagcaaaatgtcctgctcttccaaacgct
tgcacgtgtacccaggacagcgttggacctcctggaccaccaggccccgcgggaggacct
ggtgctaaaggtcccagaggtgaaagaggtatcagtggggcagttggtcctcctggtcct
cgtggggatatgggtcctcctggtccccagggtcctccaggaccccagggacccaacggc
ctctctattcctggagaacaaggtcgccagggcatgaagggtgatgctggagagccagga
cttccaggccggacaggaaccccaggactacctggcccaccagggccaatggggcctcca
ggagataggggctttacaggaaaagatggagcaatgggacccaggggtccccctgggcca
ccgggaagcccaggctctccaggggtcacaggaccgagtggaaaaccaggaaaacctgga
gaccatggcagaccaggcccatctggattgaaaggagagaaaggtgacaggggagacgtc
gcttcccacaacatgatgcgagcagttgcaagacaagtctgtgaacaattgataagtggt
cagatgagcagattcaatcagatgctgaatcagattccaaacgattaccactccagtcgc
aaccagccaggcccaccaggtcccccagggccccctggcagtgtgggagccagaggagaa
ccaggccctgggggacggccaggattccccggcaccccagggatgcagggacccccaggt
gaacgaggtttgccaggagagaaaggcgaaagaggtattggatctccaggacctcgagga
ctgccaggccccccaggtccacaaggagaatccagaaccggtccaccggggtccacaggt
tcaagaggtcctcctggtccccctggtcgtcctggaaactcaggtatccgaggcccccca
ggtcctcctggatactgcgactcgtctcagtgtgccagcgtcccatacaacggacagggc
tatccagagccctacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcatc
gtgccggtggagcctgagcggaccgcggaagagtacgaggactacggcgcagatgagcca
gcccacgagcgccctccacacgcgcgctggaggcgcgccctgccccgcggcccctggcag
tga
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integrated database retrieval system
