Sus scrofa (pig): 100516204
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Entry
100516204 CDS
T01009
Symbol
LRRC7
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 7
KO
K24055
leucine-rich repeat-containing protein 7
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssc04990
]
100516204 (LRRC7)
Domain-containing proteins not elsewhere classified [BR:
ssc04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
100516204 (LRRC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
PDZ
LRR_1
PDZ_6
PDZ_2
LRR_5
Motif
Other DBs
NCBI-GeneID:
100516204
NCBI-ProteinID:
XP_020952143
Ensembl:
ENSSSCG00000003793
ENSSSCG00000023754
LinkDB
All DBs
Position
6:complement(142735676..143273992)
Genome browser
AA seq
1575 aa
AA seq
DB search
MMENLIRGRNPPQYQRSPCKEVRAALRKRPEEELQCLEMTTKRKIIGRLVPCRCFRGEEE
IISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLS
NLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNLTQ
LYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPKSMHKLGQLERLDLGNNEFSELPEV
LDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSS
NMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGYLH
SLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKN
LPFSFTKLKELAALWLSDNQSKALIPLQTEAHPETKQRVLTNYMFPQQPRGDEDFQSDSD
SFNPTLWEEQRQQRMTVAFEFEDKKEDDENAGKVKDHSCQAPWERGQRGITLQPARLSGD
CCTPWARCDQQIQDMPVPQNDPQLAWGCISGLQQERSMCTPLPVAAQSTTLPSLSGRQVE
INLKRYPTPYPEDLKNMVKSVQNLVGKPSHGVRVESSNPTANTEQTVKEKYEHKWPVAPK
EITVEDSFVHPANEMRIGELHPSLAETPLYPPKLVLLGKDKKESTDESEVDKTHCLNNSV
SSGTYSDYSPSQASSGSSNTRVKVGSLQTTAKDAVHNSLWGNRIAQSFPQPLDAKPLLSQ
REAVPPGNLPQRPDRLPMSDAFADNWTDGSHYDNTGFVAEETTGENANSNPLLSSKSRST
SSHGXRPLIRQDRIVGVPLELEQSTHRHTPETEVPPSNPWQNWTRTPSPFEDRTAFPSKL
ETTPTTSPLPERKEHIKEPAEIPSPFSPGVPWEYHDTNPNRSLSNVFSQIHCRPESSKGV
ISISKSTERLSPLMKDIKSNKFKKSQSIDEIDIGTYKVYNIPLENYASGSDPLGSHERPD
KMLGPEHGMSSMSRSQSVPMLDDEMLTYGSSKGPQQQKASMTKKVYQFDQSFNPQGAVEV
KAEKRIPPPFQHNSEYVQQPGKTIAKDLVSPRAYRGYPPMEQMFSFSQPSVNEDAVVNAQ
FASQGARAGFLRRADSLASSTEMAMFRRVSEPHELPPSDRYGRPPYRGGMDRQSSVSVTE
SQFLKRNGRYEDEHPSYQEVKAQAGSFPVKNLTQRRPLSARSYSTESYGASQTRPVSARP
TMAALLEKIPSDYNLGNYGDKPSDNSDIKTRPTPVKGEESCGKMPADWRQQLLRHIEARR
LDRNAAYKHNTVNLGMLPYGGISAMHAGRSMTLNLQTKSKFDLQELPLQKTPSQQSNILD
NGQEDVSPSGQWNPYPLGRRDVPPDTITKKAGSHIQTLMGSQSLQHRSREQQPYEGNINK
VTIQQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDGYPEQFCVRIEKNPGLGFSIS
GGISGQGNPFKPSDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHMEHEKAVLLLKS
FQNTVDLVIQRELTV
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaacctaataaggggaaggaatcccccccaatatcagagaagtccttgtaaa
gaagtccgtgcagcacttcggaagaggcccgaagaggagttgcagtgcctggagatgacc
accaagcggaaaatcatcggccgtctggtgccgtgccgatgtttccgaggtgaagaagaa
atcatctcggtgttagattattcccactgcagccttcagcaggtgccaaaggaggtcttt
aactttgaacggactttagaagagctttacctagatgccaatcaaattgaagagctacca
aagcaattgttcaactgtcaagctctaagaaaactaagtattcctgataacgacctttca
aatctgccgaccaccattgctagtttagttaaccttaaagaactcgacatcagtaaaaat
ggtgtacaagaattcccagaaaacataaagtgctgtaaatgtttaacaattattgaagcc
agtgtcaatccaatttctaaactccctgatggcttcacgcagcttctaaacctgacccag
ctctacctgaatgacgcctttcttgaatttcttccagccaattttggaagacttgccaaa
ttgcggatattggagttaagagaaaatcatttgaaaactctaccaaagtcaatgcacaaa
ctgggccagttggaaagacttgacctaggcaataatgaattcagtgagctgcctgaagtt
ctggatcaaatacaaaatttaagggagttgtggatggataacaatgcattgcaagtgctg
cctgggtctatagggaagttaaagatgttggtatacctggatatgtcaaaaaacagaata
gaaacagttgacatggacatttctggatgtgaagccctggaggacctcttactgtcatcc
aatatgttgcaacagttgcctgactctataggattgttgaaaaaactaactactctaaaa
gtagatgacaatcaacttacaatgctacccaatacaatcggaaatttatctttattagaa
gaatttgactgtagctgtaatgaactggaatctctaccttctactattggctaccttcac
agtcttcgaacattagcagttgatgagaacttccttccagaattacccagagaaattgga
agctgtaagaatgtaacagttatgtctctacgctccaataaactggaatttcttcctgaa
gagattggacagatgcagaaactaagagtcttaaatttgagtgacaacagattgaagaat
ttaccattttcatttaccaaacttaaggagcttgcagctttgtggctttctgacaatcag
tccaaagcccttatccctttacagactgaagcccatccagaaacaaagcaaagagtgttg
actaactacatgtttccccagcaacctcgtggtgatgaagatttccagtcagacagtgac
agctttaaccctaccctgtgggaagaacagagacaacaacgcatgactgtcgcctttgaa
tttgaagataaaaaggaagacgacgaaaatgctgggaaagttaaggatcactcctgccaa
gccccctgggaaaggggccagcgtgggattactctccaacctgccagactgtctggcgat
tgctgcacaccatgggccaggtgtgatcagcagatccaagatatgcccgtcccccagaat
gacccacagctggcatggggttgtataagtggcctccagcaggagaggagcatgtgtact
ccattgccagttgcagcacaatccaccactcttccctctctaagtggcagacaggttgaa
ataaacctaaaacgatatccaactccttatccagaggatttaaagaatatggtaaaatct
gttcaaaatctggtgggtaaaccaagccatggagtgcgtgttgagagttcaaatccaact
gctaacacggagcaaactgtgaaagaaaaatatgaacacaagtggcctgtagccccaaag
gagattacagtggaggattcttttgttcatccagctaatgaaatgaggattggggaactt
cacccttcattagctgagacccctctctacccacccaaacttgttctgctagggaaggac
aaaaaagaatcaactgatgagtctgaagttgacaaaactcactgtctgaataacagtgtt
tcctcaggcacttactcagactactcaccttcccaggcttcctcaggatcctctaacacc
cgggttaaagtggggtccttgcagacaacagctaaagatgcagtacataattctttgtgg
ggtaacaggattgcacaatctttcccacagcctcttgatgcaaagccattactcagccag
cgggaggctgtccccccagggaatctaccacagcgtcctgaccggctgccaatgagtgat
gctttcgctgacaactggactgatggctcacattatgataacacagggtttgtggcagag
gagaccacaggcgagaatgccaacagtaatcctctcctaagttcaaaatctagaagcaca
tcttctcacggancgaggcctttgattaggcaggataggattgttggcgttcccctggaa
cttgagcaatctacacacagacacacacccgaaacagaagtgcctccttccaatccttgg
cagaattggaccagaacccctagtcctttcgaagacaggactgctttcccttccaaatta
gagacaacccctaccaccagcccattgcctgaaaggaaagaacatataaaagaacctgct
gaaatacctagtcctttttctccaggagtaccatgggagtatcacgatactaaccccaac
aggagtctcagtaatgtcttttctcaaatccactgccgcccagaatcttctaaaggtgtt
atttccattagcaaaagcacagagaggctttccccgctaatgaaagatatcaagtccaat
aagttcaaaaagtcacagagtatcgatgagattgacattggtacctacaaggtttataat
ataccattagaaaactatgcttctgggagtgatcccttaggaagtcacgaacgccccgat
aaaatgttgggaccagagcatggtatgtccagcatgtctcgaagccagtcagtcccaatg
ctggacgacgagatgctcacttacggaagtagtaaagggccacagcaacagaaagcctcc
atgacgaaaaaagtctatcaatttgaccaaagcttcaatccccaaggagcagtggaagtc
aaagccgaaaagaggataccacccccttttcaacacaattctgagtacgtgcaacagccc
ggcaaaaccatcgccaaggatttggttagtcccagagcttacagaggatacccacccatg
gagcaaatgttttccttttctcagccatcggttaatgaggatgctgtggtcaatgcccag
tttgcgagccaaggcgccagggctggcttcttgagacgagctgactccctggcgagttcc
acagaaatggccatgtttagaagggtcagtgaacctcatgagctgcctccgagtgatagg
tacggccggcctccgtacaggggaggtatggatcgccaaagcagcgtttcagtgactgag
tcccagttcctgaaaaggaatggcaggtatgaagatgaacacccttcatatcaagaagtg
aaagctcaggcgggaagttttccagttaaaaaccttacccaaagaaggccattgtcggca
agaagctacagtacagagagttacggtgcctcccagaccaggccagtttcagctaggcct
actatggcagctcttttggaaaaaataccatctgactataacttgggtaactatggtgac
aagccatcagataacagtgatataaagacgaggcctactccagtgaagggagaggagagc
tgtggtaaaatgcctgcagactggagacaacagctgcttagacatatagaagctagaagg
ttagacaggaatgctgcttacaaacacaacacagttaaccttggcatgctgccctatgga
ggtatttcagcaatgcatgcaggcagaagcatgactttaaacttgcagactaagtctaaa
tttgatctacaagaactacctcttcagaaaaccccgtcccagcaaagcaacattttagac
aatggacaagaagatgtatctcctagtggccaatggaatccttatcctcttgggaggcgg
gatgtacctccggacaccattactaaaaaggcaggcagccacatccagaccttgatgggg
tcccaaagccttcagcatcgtagccgggagcagcagccatatgagggaaacataaacaaa
gtgaccatccagcaatttcagtcaccattgcctattcagatcccctcttcacaggccacc
cggggacctcagcctggacggtgcttaattcaaactaaagggcaaaggagtatggatgga
tatccagagcagttttgtgtgagaatagagaagaatcctggccttggatttagtatcagt
ggtggaattagcggacaaggaaatccttttaagccttctgacaagggtatctttgttact
agggttcagcctgatggaccagcatccaacctgctgcagcctggtgataaaatccttcag
gcaaacggacatagttttgtacatatggaacatgaaaaagctgtattactactgaagagt
ttccagaacacagtagacctagttattcaacgtgagcttactgtctaa
DBGET
integrated database retrieval system
