Sus scrofa (pig): 100519671
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Entry
100519671 CDS
T01009
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100519671 (LRBA)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Others
Others
100519671 (LRBA)
Endosome - Golgi transport
100519671 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
100519671 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
SUKH_6
Cytomega_gL
DED
Motif
Other DBs
NCBI-GeneID:
100519671
NCBI-ProteinID:
XP_020956295
Ensembl:
ENSSSCG00000022381
ENSSSCG00000024878
LinkDB
All DBs
Position
8:77970087..78680307
Genome browser
AA seq
2860 aa
AA seq
DB search
MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEV
SNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKK
SIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDK
GQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMD
PVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWY
MVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQ
MAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFT
YNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLF
AQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHV
SRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIG
TVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLM
FIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNG
LRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLIT
MTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRR
AFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYH
AVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSG
ISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTG
QNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASI
NSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEAS
ERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGP
SDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKA
STNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTD
LLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSA
ATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILR
QCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISP
VRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERP
GQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGS
NVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVN
VKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLP
STLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSIT
ERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLL
CSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEF
ESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPR
EFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQ
NLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEV
DEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFP
DSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMF
LNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERY
ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR
NSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINR
LALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVE
SQIRSFGQTPSQLLIEPHPPRGSAMQAYLLLQSPLMFTDQAQQDVIMVLKFPSNSPVTHV
AANTQPGLAIPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHR
RQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTC
LTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCA
AVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFF
CTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAG
IRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8583 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaagacaataatgtcccttccccgccaccaacaggtgatgacgagggaggt
ggagggaaagaagaaacccctgcagaagggggtgccctgtccctgaaaccagggctcccc
atcagaggcatcaggatgaaatttgccgtgttgacggggttggttgaagttggagaagta
tccaatagggatattgtagaaactatctttaatctgctggttggaggacagtttgattta
gaaatgaatttcattattcaagaaggtgagagtatcatctgcatggtggacttactagaa
aaatgtgatgttacttgccaagcagaagtctggagtatgtttacagccattctgaagaaa
agcatacgaaatcttcaaatctgcactgaagttggccttgttgaaaaagtgcttgggcaa
attgaaaaagctgacagtatgatagcagatcttttagttgacatgttgggagtgctggct
agctacaatttgacagttcgagaactaaagctgttctttagtaaacttcaaggagataaa
ggacaatggcctccacatgctgggaagttgttgtctgtgttaaagcatatgcctcagaaa
tatggtcctgatgcctttttcaactttccaggaaagagtgctgcagctattgcattacct
cctatagccaaatggccttaccagaatggttttacatttcatacttggctaagaatggat
cctgtaaataacatcaatgtggataaagataaaccctatttgtattgtttcagaaccagc
aaaggtcttggttactctgctcacttcgttgggggctgtttgattataacatcaataaag
tcaaaaggaaaaggctttcaacactgcgtgaaatttgatttcaagccacaaaagtggtat
atggtaaccatagtgcacatatataaccggtggaagaacagtgagcttcgatgttatgtg
aatggtgagcttgcttcctatggagagatcacgtggtttgtcaataccagtgataccttt
gacaagtgtttcctgggctcatcagaaacagcagatgctaatagggtattctgcggtcag
atggctgcagtttacctttttagcgaagctcttaatgcagctcagatttttgctatttat
cagttgggcctgggatacaagggtacatttaaattcaaagcagaaagtgacctgttcctt
gctgagcatcacaaactcttattgtatgatggcaaactctccagtgccattgcattcacg
tacaatccacgagccaccgatgcccagctctgccttgaatcatcccctaaggacaaccct
tcaatcttcgttcattcaccgcatgcactcatgctccaggatgtgaaggcagttttaaca
cattccattcaaagtgccatgcattcaattggaggagtacaagtgctgtttccacttttt
gcacagttggattataagcaatatttatctgatgaggttgacttgactatatgttcaact
ttgctggcttttatcatggagttgttgaagaactcaattgctatgcaagagcagatgctt
gcttgcaagggcttcttggttataggatatagccttgaaaagtcttccaaagcccatgtc
agcagagcagtgcttgaactttgccttgcgttttctaaatatctgagtaatctacacaat
gggatgcccctactcaagcaattgtgtgatcacattcttcttaacccagctatatggatt
cataccccagccaaggtacagatgacactctatacttatctgtccacggaattcattggt
acagtcaacatttataatgccattcggagagttggaacagtgcttctcatcatgcataca
ctcaagtactactactgggcagtgaatcctcaggatcggagcggtatcaccccaaaagga
ttagatggaccacgacctaatcaaaaagaaatgctttcactacgagcattcttattgatg
ttcattaaacaattagtgatgaaggattctggagtaaaggaagatgaactacaggccatt
cttaattatctactcactatgcatgaggacgacaatctaatggatgtcctacagttgctt
gttgcattaatggcagaacatcctaactctatgatacctgcctttgacgaaagaaacggg
ttacgtgttatgtataaacttatggcatcaacaagtgaaggaatcagagtacaagctctc
aaagcaatgggctattttttaaaacacctggccccaaaaagaaaagctgaaatcatgctt
ggacatggattgttttcattgctggccgaaagactcatgcttcagacaaatttaatcaca
atgactacgtacaatgtcctgtttgagattctcatagaacagatctgtactcaggtgata
cataaacagcatccagatcctgattcttcagtgaagatacaaaatcctcagatactgaaa
gtaattgcaaccctgcttcgaaattctccccagtgcccagagagcatcgaagttcgcaga
gcttttctttctgacatgattaaactttttaataatagcagagaaaatagaaggagcttg
ctgcagtgttctgtgtggcaagaatggatgctttctctctgctattttaatcctaaaaat
tcagatgaacagaagataacagaaatggtatatgctatattcagaatcctactttaccat
gcagtcaaatatgagtggggtggctggcgagtgtgggtagacaccttatcaatcacccat
tcaaaggtcacttttgaaatacacaaagaaaatcttgccagtgtatttagggaacaccag
ggaaaagttgatgaggaaatagggccgtgttcctcaagtccagatcaagcggtctctggc
attagcggggatgttaatgtaggatcccagcaatcagatacaaaggattctcctgtgccc
tctcatatcaccagaaacagtgacgaaaagtcaagtcttgagaagacaagctcagtagaa
tctgcatccagtgctgaactgcagacttgcggtacatctaatgaagagaggaaaactggg
caaaacaatcaggaatttcttgatgaagtccctctagaagaaacactgacaaatgaaaca
attaatgcagggagtttagaagtatcctctgatatgacagaagccatggctatttcctct
aattcttttaaaacaactgacaaagatgtaatgactgtcagtgaagtaactgcttccata
aattctccttcagaagaagatagttcagaggtgcctgaagtattggataagtccatggta
gaggaagaagatgatgatgattacgtagaactgaaggtagaaagtagtccttctgaggaa
gccagtccatccacagagctccaagacaatagtttatctacagctgcttctgaagccagt
gaaagactagacatgtttaataatgagcacaaattagtatttcaagaggaagagcctgca
agcaagaaacaaactgatgctgaaactcacgatcctaaagattctggaatcttgactatg
acagcatcagggtcttcagctacctcaccaggcactcctgcttcccaggcaactggacca
tcagacattggtcaggtgctgaaggaaggggaggaaacaaccagctttgctggagaaacc
aaagtaattagtgattctcatggtgacatcttcgagtctccgactacttctgagcagagg
attgctaggctggatgtttccagtgttgctacagatactgaaagactggaattgaaagcc
agtacgaacatggaagcacctcagcctcatcaacctgtgcttgagatgtcaaggcaacag
gagcagccagggcgtggaacggcaccagatgcagttaatggacaaagaagggattctaga
tctatgtttcgtatacctgagttcagatggtcccagatgcatcagcgtttgctcactgat
ctactattttcaatagaaacagatatacagatgtggagaagccattcaacaaagacagtt
atggacttcgtgaatagcagtgacaatgtcatctttgtccacaacacaattcatctcatc
tctcaagtgatggacagtatgattatggcttgtgggggaatactgccgttgctttcagct
gctacgtcggctacacatgagctggagaatattgaacctactcaaggcctttcaatagaa
gcctctgtgacatttttgcagagactaatcagccttgtggatgtgcttatatttgcaagt
tctcttggctttactgaaattgaagctgaaaaaaatatgtcatctggaggaattttgcgg
cagtgtctgcgactggtgtgcgccgtggcagtaaggaattgcttagagtgtcaacagcat
tcacagctcaaaaataaaggtgatacgggaaaaggccagaaaacaacacatagcctgatt
tccatggggaaatctggagcaaagagtccagtggacatcataactggtggcatatctcca
gtaagagattttgacaggcttctgcaagacatggatattaatcgactcagggcagttgtc
ttcagagacatcgaggatagcaaacaagctcaatttttggccttggcagttgtatacttt
atctctgttcttatggtctcgaaatacagagatattttggaaccccaaaatgaaaggcct
ggccagtcatttaaggaacgtggtagtgagagtgagaatttatcagttcctgatgtagaa
agctcatcagcagcactcagtccattaactccaccatcagtggaagaatctgaaagcaca
tcatctgctcggaggagggactcaggcattggggaagaaacagctacaggttcaggaagc
aacgtggacattactcctcctgtagcatctccaagtgtcagtgcaggcccggatgcaatc
agtgaggtgctctgcactctttctttggaggtgaataagtctcaggaatccaaaaatgat
ggaggccatgagtcggataacaaggctgcagcatcagtttcagtctcaaaaaacgtcaat
gtgaaggatattctccgaagcttggttaacataccagcagatggagtcacagtggatcct
gcccttctgccaccaacctgtctcggagtgcttggtgatctgtctgttgaacaacctgtg
cagttcagatcttttgacagaagcgtcatcattgcaacaaaaaaatcaaccgtcttacct
tccacgcttactacaagtatacctaccaatgctgtcagtgtggtttcttcagtagattca
gcccaagcctcagatgcggggcgagaatcacctggtggtagatcatctagtgcaaaatta
cctgcggttccagcagttggttcagttccacaagaccaagtttccaatatgagtattaca
gagaggctcgaacatgctttggaaaaggcagctcctcttctgagagagatatttgtagat
tttgcaccttttctttctcggacacttttgggtagtcatggacaagaactgcttatagaa
ggaacaagtctggtttgcatgaagtctagtagttcagttgtggagttggttatgctcctg
tgctctcaggagtggcagaattctattcagaagaatgcaggccttgcttttattgaactt
gtcaatgaaggaaggttgctgagccagacaatgaaggatcatctagtaagagtagcaaat
gaagccgaatttatcctgagcaggcagcgagcagaagatattcacagacatgcagaattt
gagtcactctgtgcccagtattctgcagacaaacgagaggatgaaaagatgtgtgatcat
ctgataagagcagctaaatatcgagaccatgtgacagcaactcagctaatccagaaaatt
atcaacattctcacagacaagcatggagcctggggaaattccacagtgagtcgtcctcgt
gagttctggcgcctcgactactgggaagatgacttgaggcgccggcgacgatttgtgcgt
aaccctctaggatccacacatcctgaagcgacactaaaaacagccgtggagcatgctgca
gatgaagatattcttgctaaaggaaaacagtccatcaagagtcatgctttgggaaatcag
aacttggaaaacgagatcctcctggaaggcgacgacgatactctgtcatccgtggaagag
aaagatttagagaatctcactggtcctgttagcctgagcacaccagctcagcttgtggcc
ccctccgctgtagtcaagggcactctttcagtcacttcctctgaactctatttcgaggtg
gatgaagaagaccctaacttcaggaaaatggaccccaagatcctggcatatacagaaggg
ctgcatggaaaatggctgttcacagagatacgatcagttttttctcgtcgttatcttttg
caaaatacagccctggagatctttatggcaaacagagttgctgtaatgttcaacttccca
gactctgcaacagtaaagaaagtagttaactatctacctcgtgttggcattggaaccagt
tttggattgcctcaaaccaggcgtatctcattagctagtccacgtcaactttttaaagct
tctaatatgacccagcgatggcaacacagagagatttcaaattttgagtacttgatgttt
ctcaacacaatagcaggacggagttacaatgacttaaatcagtatccagtgtttccctgg
gtgattactaattatgaatcagaagaactggatcttactttgccaagtaacttcagagat
ttgtccaagccaataggagctttgaatccaaaaagagcagcattctttgcagagcgttat
gaatcctgggaagatgatcaagtcccaaagttccactatggtactcattactcaactgca
agttttgttcttgcatggctgctaagaatagaacccttcacaacgtatttcctaaatttg
caaggagggaaatttgatcacgcagatcgaacattttcatcaatttccagagcctggcga
aacagtcagcgtgatacatctgatattaaggagttgattcctgaattttattacctccct
gagatgtttgtcaacttcaatgattataatcttggagtgatggatgacgggacagtagtg
tctgatgttgaacttcctccttgggccagaacctcggaagaatttgttcgcataaacaga
ttggctctggagagtgaatttgtttcctgccagcttcaccaatggattgatctcattttt
ggctataaacagcaaggaccagaggctgttcgagccctcaatgtgttctattatctgacc
tatgaaggagctgtcaatctcaattcaatatctgatccgatattgagagaggctgtcgaa
tctcaaatccgaagctttgggcagacgccttctcaactactcatagagccccatcctccc
agaggttctgccatgcaagcgtatctcctcctgcagagtccattgatgttcacagaccaa
gctcagcaggacgttatcatggttctaaagttcccctccaactcccctgtcactcacgtg
gcggccaacacccagcctgggttggcaattcctgccgtgatcacagtcactgccaacagg
ctcttcgcagtgaacaagtggcacaaccttccggctcatcaaggtgctgtacaagaccag
ccataccagctgccagtggaaatcgatcctctcatagccagcaatacaggaatgcacagg
agacaaatcacggaccttttagaccaaagcattcaagtccattcccagtgctttgtcatc
acttcggacaaccgctatattcttatctgtggcttctgggataagagtttccgggtctat
tctacagacacaggaaaattgatccaagtggtatttggccattgggatgtcgtcacttgt
ctcactcgttcggagtcatatattgggggaaattgctacattctctcagggtcacgtgac
gccacccttctgctctggtactggaatggaaaaagcagtgggattggagataacccaggc
agtgagaccaccactcctcgggccatcctgacaggccacgactacgaggtcacctgtgct
gctgtctgcgcggagctaggcctggtgttaagtggttctaaagaaggaccatgcctcata
cattccatgaatggagacttgttaaggactctggagggtcctgaaaactgcctgagacca
aaactcattcaagcttcaagagagggtcactgtgtcatattctatgaaaatggcttcttt
tgtacatttagtgtgaatgggaaactccaggccaccatggaaacagatgataacataagg
gccatccagctgagccgggacgggcagtacctgctcacgggaggagacaatggcgtggtc
atggtgtggcaggtgtctgacctcaagcagctctttgcctatccaggctgtgacgcagga
atccgggccatggccctgtctcacgaccagaggtgcatcatttccggcatggcttcagga
agcattgttctgttctacaacgactttaaccggtggcaccacgagtaccaaacccgctac
tga
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integrated database retrieval system
