Sus scrofa (pig): 100525426
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Entry
100525426 CDS
T01009
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100525426 (CASC3)
03015 mRNA surveillance pathway
100525426 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100525426 (CASC3)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100525426 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
100525426
NCBI-ProteinID:
XP_020922683
Ensembl:
ENSSSCG00000017477
LinkDB
All DBs
Position
12:complement(22199227..22221573)
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AA seq
703 aa
AA seq
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MADRRRQRASQDTEDEESGASGSDSGSSLARGGGSCSGSVGGGGSGSLPSQRGGRVGALH
LRRVESGGXKSAEESECESEDGIEGDAVLSDYESAEDSEGDEGDYSEEENSKVELKSEAN
DAANSSAKEEKGEEKPDSKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA
YIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALY
GYDIRSAHNPDDIKPRRIRKPRFGSPPQRDQGWIGERPNKPHRHQGPGGTLPPRTFINRN
AAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHAGRSGETAKHETSYRSRRLEQSPVR
DPSPETDTQVLDSPEKEEAAPEIPNPAPDTTPPAPDRPIEKKSYSRARRTRIKAGDAVKV
AEEVPPPPEGLTPAPPVPETTPPPPAKTGNWEAPVDSTTGGLEQDVAQLNITEQNWTPGQ
PSFMQSRELRGVPNHMHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPMPEPPAPPVHI
SIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLY
PPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQV
YGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcaacgcgcttcgcaggacactgaggacgaagaatctggtgct
tccggctcagacagtggcagttccttggcgcggggcggcgggagctgcagcggcagtgtt
ggaggcggcggcagcggctctctgccctcccagcgcggaggccgagtcggggcccttcat
ctgcggcgggtggagagcggggggnccaagagcgctgaggagtcggaatgtgagagtgaa
gatggcatcgagggcgatgctgttctctctgattacgaaagtgcagaagactcagaaggt
gatgaaggagattatagtgaagaggaaaactccaaagtggagctgaaatccgaggccaat
gatgctgctaattcctcagcaaaggaagagaaaggagaagaaaagcctgactccaaaggc
actgtgactggagagaggcagagtggggatggacaggaaagcacagagcctgtggagaac
aaagttggtaaaaagggccctaaacatttggatgatgacgaagatcggaagaacccagca
tacataccccggaaagggctcttttttgagcatgatcttcgagggcagactcaggaggag
gaagtcagacccaagggacgtcagcgaaagctttggaaggatgagggtcgctgggagcat
gacaagtttcgggaagatgagcaggctccaaagtcccgacaggagctcatcgctctttat
ggctatgacatccgctcagctcacaatcctgatgacatcaaaccccgaagaattcggaaa
cccaggtttgggagtcctccacagagagatcaaggctggattggtgagcggccaaataag
ccccatcgccaccagggtcctgggggcaccctgccaccaaggacatttatcaacaggaat
gctgcaggtactggccgcatgtctgctcccaggaattactctcgatccgggggcttcaag
gaaggtcgtgctggttttaggcctgtggaagctggtgggcagcatgctggccggtctggt
gagactgctaaacatgagactagttaccggtcacggcgcctggagcagagtcctgtaagg
gatccatctccagaaacagacactcaagtgcttgacagtcctgagaaggaagaggcagcc
ccagagataccaaatcctgctcctgacactacacctccggcccctgacaggcctattgaa
aagaaatcctattcccgggcaagaagaaccagaatcaaagctggagatgcagtcaaggtt
gcagaggaggtcccgcctccacctgaagggctgaccccagcacctccagtcccagaaacc
acaccaccaccacctgctaagactggaaactgggaggctccagtggattctactaccggt
ggacttgaacaagacgtggcccaactaaatataacagaacagaattggaccccaggacag
ccttcgttcatgcagtcacgagaacttcggggtgtacccaaccacatgcacatgggagca
ggacctccgcctcagttcaaccggatggaagaaatgggtgtccagggtgggcgagccaaa
cgctactcatctcaacggcaaagacctatgccagagccccctgcccctcctgtgcacatc
agtatcatggagggacattactatgatcccctgcagttccagggaccaatctatacccat
ggtgacagccctgccccactgcctcctcagggcatgattgtacagccagaaatgcaccta
ccccacccaggtttacatccccaccagacaccggcacctctgcccaatccaggcctctat
cccccaccagtatccatgtctccaggacagccaccacctcagcagttgcttgctcctact
tacttttctgctccaggcgtcatgaactttggtaatcccagttacccttatgctccaggg
gcactgcctcccccaccgcctcctcatctatatcccaacacacaggccccatcgcaggtg
tatggaggagtgacctactataaccccgcccagcagcaggtgcagccaaagccctcccca
ccccggaggactccccagccggtcaccattaagcccccaccacccgaggttgtaagcagg
ggttccagttaa
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