KEGG   Sus scrofa (pig): 100621798Help
Entry
100621798         CDS       T01009                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6 isoform X2
  KO
K11407  
histone deacetylase 6 [EC:3.5.1.98]
Organism
ssc  Sus scrofa (pig)
Pathway
Alcoholism
Human papillomavirus infection
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 Human Diseases
  Cancers
   05203 Viral carcinogenesis
    100621798 (HDAC6)
  Substance dependence
   05034 Alcoholism
    100621798 (HDAC6)
  Infectious diseases
   05165 Human papillomavirus infection
    100621798 (HDAC6)
Enzymes [BR:ssc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100621798 (HDAC6)
Protein phosphatases and associated proteins [BR:ssc01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100621798 (HDAC6)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     100621798 (HDAC6)
Membrane trafficking [BR:ssc04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100621798 (HDAC6)
Chromosome [BR:ssc03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     100621798 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
Ensembl: 
LinkDB All DBs
Position
X
AA seq 1117 aa AA seqDB search
MTSTGQDSTTTRQRRSRHNPHSPPHDSSVTSKRGVKKGAGLRSSPNLADVKKKGRMKKLS
QAAEQDLIVGLQGLDLNLEARTPSGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLM
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVALAARYAQQ
KHDVQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLHLLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPLLEFPGAPCPSA
QASLSCALEALEPFWEVLVRSAETLEDEDTVEGDHVEEEEEPWQPPELPMLAWPVLQART
GLVYDQQMMDHYNLWDSHHPEMPQRILRIMRRLEELGLAGRCLALPARPATDAELLACHS
AEYVSRIRATEKMRTRELHREGANYDSIYICPGTFACAQLAAGAACRLVEAVLAGEVLNG
IAVVRPPGHHAERDSACGFCFFNSVAVAARHAQAISGHALRILIVDWDVHHGNGTQHLFE
EDPSVLYISLHRYDHGTFFPMGDEGASSQIGQAAGTGFTVNVAWNGPRVGDPEYLAAWHR
LVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPECYAHLTHLLMGLANGRIILILEGG
YNLISISESMAACTRSLLGDSPPLLTLLRPPLSRALASIAETTQIHRRYWRSLRVTKVED
KERPSSSKSFAKKPSQPAKPKPSKGMTAPKGDIPEAHTGKATSVSSVKVSPPGQTKSEAA
LVELTQDQSSKAATEEAVGGAKLIQSPPASGGDNQTPPASPRQGSTTLISPSKLVGNLGA
LELRNEVQESPKEEGLLGEAAGGQNMDNLMLMQVFGNQADTDQAMFYAVSPLLWCPHVVA
VRPVPEAGLDVTQPCQDCGALQENWVCLSCYQVCCGRYINAHMLQHHESSGHPMVLSYAD
LSTWCYPCQAYVHHEALLAVKNIAHQNKFGEGVPHSR
NT seq 3354 nt NT seq  +upstreamnt  +downstreamnt
atgacctccaccggccaggattccaccacaaccaggcagcgaagaagtaggcacaacccc
cactcccccccacacgactccagcgtcacctcgaagcgaggtgttaaaaagggtgccgga
ctccgctccagccccaatctagcggatgtaaagaagaaaggcagaatgaagaagcttagc
caagcagccgagcaagacctaatcgtggggctccaagggctggatctgaacctggaggcc
aggacaccgtctggcactggcttggtgttggatgagcagctaaatgaattccactgcctc
tgggatgacagcttccctgaaggccctgagcggctccatgccatcaaggagcagctgatg
caggagggcctcctggaccgctgcgtgtcctttcaggcccgattcgccgaaaaggaggag
cttatgttggttcacagcctagagtacattgatctgatggagacgacccagtacatgaat
gagggggagctccgcgtcctagcagacacctatgattcggtttatctgcatccgaactca
tacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgccgtcctgggg
gctgagatccggaatggcatggccatcatcaggcctcctggacaccacgcccagcacagt
cttatggacgggtattgcatgttcaaccacgtagccttggccgcccgctacgctcagcag
aagcatgacgttcagagggtccttattgtggattgggatgtgcaccatggtcagggaaca
cagttcacctttgaccaagaccccagcgtcctctatttctccatccaccgctatgagcag
ggtcggttctggccccaccttaaggcctctaattggtccaccacgggttttggccaaggc
cagggatacaccatcaatgtgccttggaaccaggtggggatgcgagatgccgactacatt
gctgctttcctgcacctcctgctgccagtcgcccttgagttccagccccagctggtcctg
gtagccgctggctttgatgccctccaaggggaccccaagggtgagatggccgccactccg
gcagggttcgcccagctaactcatctgctcatgggtctggcaggaggcaagttgatcctc
tcactggagggcggctacaacctccgctccctggctgagggcgtcagtgcctcactccac
acccttctgggagacccttgtcccttgctggagttcccgggcgccccctgtcccagtgcc
caggcgtcactatcctgtgctctggaagcccttgagcccttctgggaggtccttgtgaga
tctgctgagaccctggaggacgaggacaccgtggagggggaccatgtggaggaggaggag
gaaccatggcagccccctgagctaccgatgctggcgtggccggtgctgcaggctcgcaca
gggctggtctacgaccaacagatgatggatcactacaacttatgggacagccaccacccc
gagatgcctcagcgcatcctgcgtatcatgcgccgactggaggagctgggcctcgccggg
cgctgcctcgctctgcccgcccgtcccgccacggatgctgagctgcttgcctgccacagt
gctgaatacgtgagtcgcatccgggccacggagaagatgaggacccgggagctgcaccgc
gagggtgccaactatgactccatctacatctgccctggcaccttcgcctgtgcgcagctg
gccgcgggcgccgcctgccgcctggtggaggctgtgctggcaggagaggttttgaatggt
attgccgtggtgcgcccccctggacaccacgcagaaagggactcggcttgcggtttctgc
tttttcaattctgtggcagtagctgctcgccatgctcaggccatcagtgggcatgcgctg
cggatcctgatcgtggactgggacgtccatcatggtaacggcactcagcacttatttgag
gaggaccccagcgtgctctacatttccctgcaccgctacgatcatggcaccttctttccc
atgggggatgagggtgccagcagccagataggtcaggctgcaggcacgggcttcactgtc
aacgtggcctggaatgggccccgcgtgggtgaccccgagtacctggctgcatggcatcgg
ctggtgcttcctattgcctatgagtttaacccggaactggtgctggtctcagctggtttc
gacgctgcccggggggacccgctgggtggctgccaggtgtcacctgagtgctacgcccac
ctcacccacctgctgatgggcctggccaatggccgtattattctaatcctagagggtggc
tataacctgatatccatctcggagtccatggctgcctgtacccgctccctccttggggac
tcaccacccctgctgaccctgctgaggcccccactctcacgggccctggcctcgatcgcc
gaaaccacccaaatccatcgcagatactggcgcagcttgcgggtcacaaaggtcgaagac
aaagagagaccctccagttctaagtcgttcgccaagaagccatcccaaccagccaagcct
aagccatccaaggggatgaccgccccaaaaggggacattccggaagcacacacagggaag
gccacctcggtatcatcagtgaaagtgtcccccccaggccagacgaagtcagaggcagcc
ctagtggaacttactcaggaccagtcctcaaaggctgccacagaggaggctgtgggagga
gctaagctgatccaaagccctccagcctcgggaggtgacaaccagactcctccagcttct
ccacggcaaggatccacaactctgatctcccccagcaagctggtaggcaatctcggagcc
ttggaactgagaaatgaggttcaggagtccccaaaagaggaagggctgctaggagaggca
gctggaggtcagaacatggacaatttaatgctgatgcaggtctttggaaaccaagctgac
actgaccaggccatgttctatgctgtgtcaccactgctctggtgtccacatgtggtggca
gtacgccccgtacctgaagcgggcctggacgtgacccaaccttgtcaagactgtggagca
ctccaggagaactgggtgtgtctgtcttgctatcaggtctgctgcggccgttatatcaac
gcccatatgctccagcaccacgaaagctcaggccaccccatggtcctcagctacgccgac
ctgtctacctggtgttacccctgccaggcctatgttcaccacgaggctctcctggctgtg
aagaacatcgcccaccagaacaagtttggggagggcgtgccccactcccgctag

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