Shewanella sediminis: Ssed_1022
Help
Entry
Ssed_1022 CDS
T00596
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_1022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_1022
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ssed_1022
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ssed_1022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Gag_p24
Flavi_DEAD
AroM
Motif
Other DBs
NCBI-ProteinID:
ABV35633
UniProt:
A8FS10
LinkDB
All DBs
Position
complement(1215527..1216834)
Genome browser
AA seq
435 aa
AA seq
DB search
MRFESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMFDNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQK
LKRGADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNR
QNLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRALVA
TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLADIE
KLIGKQLRRITVPGYEVGSRELLIKQIQKRRSFAKKQQREDNTGAQMIAEKNLGSRRVKV
KNSSNKAPTKVKKIR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagttttgctcccgagattttacgtgctatctcagaatgtggt
tatcagaaaatgacgccagttcaacaagaagccattccggcgatccgcagaggccaggat
gtattagccagtgcgcaaacgggcacaggtaaaaccgccgcctttgcactgccgatcctg
cagaagatgttcgacaatccgactgagactcaacgatcgaatactcgcgccctgatcctg
acaccaacccgtgaactggccagtcaaatagccgacaatatcaatgattacagtaagtac
atggaagtttcggtattaaccatctatggtggtgtaaagctggagactcaagcacaaaag
ctcaaacgtggtgcagacatcatcgtcgccacaccaggacgcttactcgagcaccttcag
gcgtgtaacttaaatctgtcgaatgtcgactttatggtattagacgaagcggatcgtatg
ttggatatgggcttcatcagcgatatccagaagatcatgcaggctgttaacaagaaccgc
cagaatttactcttctctgccaccttctctagcgcagtgaagaaacttgccaacgatatg
ttggtcaagccaaaacttatcagtgtcgatagccaaaacagcaccgccgatacggtaagt
caggtggtctacccggtagagcagcgtcgtaagcgagagctgctgtctgaacttatcggc
aagaaaaactggcaacaggtgttggtctttaccgcgacgcgtgacgccgccgataaactg
gtaaaagagttaaacctcgatggtatcacatcggctgttgtacatggcgagaaggctcag
ggtaaccgtcgccgcgctctgcgtgaatttaaagagggcaaggtacgcgccttggtggcc
accgaagttgcggctcgcggcctcgatattcaagatcttgagtatgtcgttaactacgat
ctgccattcttagccgaagattatgtgcaccgtatcggccgtaccggccgcgccggaaaa
tcaggggtcgctatttctctggtcagccgtgaagaggagcgtaccttagccgatatcgaa
aagctgattggcaagcagcttcgccgtatcacggtcccgggctatgaggtgggtagccgt
gagctgcttatcaagcaaattcagaaacgccgtagttttgccaagaaacaacaaagagaa
gataacaccggcgcgcaaatgattgcagagaagaatttgggcagccgaagagttaaagtt
aaaaactcatcgaacaaggcgccaacaaaggtcaagaaaatcagataa
DBGET
integrated database retrieval system
