Selenomonas sputigena: Selsp_0999
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Entry
Selsp_0999 CDS
T01474
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssg
Selenomonas sputigena
Pathway
ssg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Selsp_0999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssg03021
]
Selsp_0999
03400 DNA repair and recombination proteins [BR:
ssg03400
]
Selsp_0999
Enzymes [BR:
ssg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Selsp_0999
Transcription machinery [BR:
ssg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Selsp_0999
DNA repair and recombination proteins [BR:
ssg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Selsp_0999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEB99959
UniProt:
F4F0L1
LinkDB
All DBs
Position
1121033..1125115
Genome browser
AA seq
1360 aa
AA seq
DB search
MLDVNEFDSMRIGLASPDKIREWSYGEVKKPETINYRTLKPERDGLFCERIFGPTHDWEC
HCGKYKRIRFKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDI
SPRALEKVLYFASYIVLDPGDTPLIKKQLLTESEYRDNRAKYGSAFRVGMGAEAVKELLV
ELDLDKMNEELRKDLREVSGQRKIRAIRRLEVVEAFRKSGNQPSWMVLDAVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKRLVSSALAQNIKSAKHMVERARPEVWDMLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLTEGRALKLHPLACTAYNADFDGDQMAIHLPLSAEAQAEARILMLAANHIL
APKDGRPIIVPTQDMVLGAYYLTILRPGALGEGKIVTGIEEALLMYQHQELALQAEIQVR
IEGYGLVKTSLGRMIFNEILPQELRYYHKDEETGQWCLGIRMDKKQLGKLVANCFDHFGA
ARTAVVIDDVKNLGYHYACLAGMTVAISDIIVPEKKQDILAATKKQVNGIERQFSRGLIT
DEERYNKVIALWTQATDDVTDAMMDNMDAFNPIFMMADSGARGNKQQMRQLAGMRGLMAD
PSGKIIDLPITANFREGLTVSDYFISSHGARKGLADTALRTADSGYLTRRLVDVAQDVIV
REDDCDVESINLLRERARLAESAADAIEILDEQLVGRLTAADIMSPATDELLLPKDTVLT
EGDLELLAEEDVHEIVLRGSSLTSEAIISSTMVSEKIALGEPDEARRAEIKHAMIHEMLG
KETRYAVTDSEGTEIVPAAVDLTEEQIEAILASDAKELKVRNNNVRGIEVEAIKEGNGII
ESLEDRITGRVLAEDIFNPETGEKVASLNDAIDEALAKKIAAVRERVSIRSVLTCKSQFG
VCVKCYGRDLANQTEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVE
ELFEARKPKHHAIIAEIEGTVEITDTGKGMRKLLIVPESGESREYAIPYGARLALHDGDH
LMPGDRLTEGSINPHDILRVCGLRDTQRYLVYEVQKVYKSQGVEINDKHIEVMVRQMLHK
VKIEEAGTTSFLPGEYVDINSFEAANAVAIEADGEPAVAKPILLGITKASLATDSFLSAA
SFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMGRYRNIAVVDPNPPVPEPPE
GDGEEMAAESEETSMEEPTLHAEEAVEEKEDKATEENIGA
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaacgaatttgactcgatgcgcatcggtctggcatcgccggacaagatc
cgcgagtggtcctatggtgaggtcaagaagccggagacgatcaactaccgcacgctgaaa
cccgagcgtgacgggctcttctgcgagcgcatcttcggaccgacgcacgattgggaatgc
cactgcggcaagtacaagaggattcgcttcaagggcgtcgtctgcgaccgctgcggcgtc
gaggtgacgcgcgccaaggtgcgccgcgagcgcatgggtcacattgagcttgctgctccc
gtttcccatatctggtacttcaagggcataccgagccgcatgggtctcatcttggacatt
tccccacgcgcgttggaaaaggttctctacttcgcttcctacatcgtccttgatccgggc
gatacaccgctcatcaagaagcagctcttgacggagagcgaatatcgcgataaccgcgcc
aagtatggcagcgccttccgcgtcggcatgggcgctgaggccgtgaaggagcttctcgtg
gagctcgatttggataagatgaacgaggagctcaggaaagacttgcgcgaggtcagcggg
cagcgcaagattcgcgcgatccgccgactggaagtcgtcgaggcattccgcaagtcgggc
aatcagccctcgtggatggtgctcgacgccgtccccgtcattccgcccgagcttcgcccc
atggtgcagctcgacggcggacgctttgcgacgagtgatctgaacgacctctaccgccgc
gtcatcaaccgcaacaaccgcttgaagcgtctcctcgatctcggtgcgccggacatcatc
gtgcgcaacgagaagcgcatgctgcaggaggccgtcgacgccttgatcgacaatggccgc
cgcggccgccccgtcacggggccgggcaaccgcccgctgaagtcgctttccgacatgctc
aagggcaagcagggacgcttccgtcagaaccttctcggcaagcgcgtcgactactcggga
cgctccgtcatcgtcgtcggccctgagttaaagctccaccagtgcggtctgccgaaggaa
atggcgctcgaactcttcaagcctttcgtcatgaagaggctcgtgagttccgctctcgca
cagaacatcaagagcgccaagcacatggtcgagcgcgcgcgtccagaggtctgggatatg
ctcgaagaggtcatcaaggagcatcctgtcctcctgaaccgcgctccgacgctgcatcgc
ctcggcatccaagcattcgaaccagtgctgacggaaggacgtgcgctgaagcttcatccg
ctcgcgtgtacggcgtacaatgccgacttcgacggcgatcagatggcgattcatctgcca
ctgtcggcagaggcgcaggcggaggcgcgcatactcatgctcgctgcgaaccacatcctc
gcgccgaaggacggcagaccgatcatcgtgccgacgcaggacatggtgctcggcgcctac
tatctgacgatcctgcgccccggcgcactgggcgagggcaagatcgtcacgggcatcgag
gaagcgcttttgatgtatcagcatcaagagcttgccctgcaggcggagattcaggtgcgc
atcgagggatacggcctcgtcaagacttcgctcgggcgcatgatcttcaacgagatcctg
ccgcaggagcttcgctattaccacaaggatgaggagacggggcagtggtgcctcggcatc
cgcatggacaagaagcagctcggcaagctcgtggcaaactgcttcgatcacttcggcgct
gcgcgcacggccgtcgtcatcgacgacgtcaagaacctcggctatcactatgcgtgcctt
gcgggcatgacggtcgcgatttccgacatcatcgtgcccgagaagaagcaggacatcctc
gcggcgacgaagaagcaggtcaatggcatcgagcgtcagttcagccgcggtctcattacg
gatgaggagcgatacaacaaggtcatcgcgctttggacgcaggcaacggacgatgtgacg
gacgccatgatggacaacatggatgccttcaaccccatcttcatgatggcggactcgggc
gcgcgcggcaacaagcagcagatgcgtcagctcgccggcatgcgcggcctcatggccgac
ccgtcgggcaagatcatcgacctgccgatcacggcgaacttccgcgagggtcttacggtt
tccgactacttcatctcctcgcacggcgcgagaaagggtcttgccgatacggctcttcgt
acggcggactcgggctacctcacgcgccgtctcgtcgatgtcgcacaggacgtcatcgtg
cgcgaggacgactgcgatgtggagagcatcaatttgctgcgtgagcgagcacgcctcgcg
gagtcggcggcggatgccatcgagatcctcgatgagcagctcgtcggccgcctgacggca
gcggacatcatgagtcctgcgacggatgaactgctgctgccgaaggacacggtgctgacg
gaaggcgatttggaacttcttgccgaggaagatgtgcatgagatcgtcctgcgcggctct
tccctgacctccgaagccatcatcagcagcacgatggtctcggagaagattgcccttggc
gagccggacgaggcgcgccgtgcggaaatcaagcacgctatgattcacgaaatgctcggc
aaggaaacgcgctatgccgtcacagacagcgaaggcacagagatcgttcccgccgccgtc
gatttgacggaagagcagatcgaggccatccttgcgagcgatgccaaggagctcaaggtg
cgcaataacaatgtgcgcggcatcgaggtcgaagccatcaaggaaggcaacggcatcatt
gagtcgttggaggatcgcatcacgggacgtgtgctggcggaagacatcttcaatcctgag
acgggcgagaaggtcgcctcgctcaacgatgcgatcgacgaggcgcttgccaagaagatc
gcggcggtgcgcgagcgtgtgtccatccgcagcgtcttgacgtgcaaatcgcagttcggc
gtctgcgttaaatgttacggacgcgatctcgcgaaccagacggaagtcgaggtcggcgag
gccgtcggcacgattgccgcgcagtccatcggcgagccgggcacacagctcacgatgcgc
acgttccatacgggcggcgttgcgggtgaggacatcacgcagggtctgccgcgcgttgaa
gaactgttcgaagcgagaaagcccaagcaccatgcaatcatcgctgagatcgaaggaacg
gttgagatcacggatacgggcaagggcatgagaaagctcctgatcgttcctgaatcgggc
gaatcgcgcgagtatgcgattccctacggcgcacgcctcgccctgcacgacggcgaccat
ctcatgcctggcgatcgcctgacggaaggatcgatcaatccgcacgacatcctgcgcgtc
tgcggtttgcgcgatacgcagcgctaccttgtctatgaggtgcagaaggtctacaagtcg
cagggcgttgagatcaacgacaagcacatcgaggtcatggtgcgccagatgctgcacaag
gtgaagatcgaggaggcgggcacgacgagcttcctgcccggcgaatacgtcgacatcaac
tcctttgaagcggcgaatgccgtcgccatcgaggccgacggcgagcctgctgtcgcgaag
ccgattctcctcggcatcacgaaggcgtcgctcgcgacggattccttcctgtcggcagcc
tccttccaggaaacgacgcgcgttctcacggacgctgccatcaagggcaaggtcgatcct
ctgatcggtctgaaagagaatgtcatcatcggcaagctgattcctgcaggaaccggcatg
ggacgctatcgcaacatcgcggtcgtcgatccgaatccgcccgttcccgagccgcccgaa
ggcgacggcgaggaaatggcggctgagtccgaggagacgtcgatggaagaaccgacgctc
catgcggaagaagctgtcgaagagaaggaagacaaagcgacagaagaaaatatcggcgct
tga
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