KEGG   Sediminispirochaeta smaragdinae: Spirs_0893
Entry
Spirs_0893        CDS       T01287                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ssm  Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:ssm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssm03032]
    Spirs_0893
   03400 DNA repair and recombination proteins [BR:ssm03400]
    Spirs_0893
Enzymes [BR:ssm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Spirs_0893
DNA replication proteins [BR:ssm03032]
 Prokaryotic type
  DNA Topoisomerases
   Spirs_0893
DNA repair and recombination proteins [BR:ssm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Spirs_0893
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim DUF2064 Toprim_4
Other DBs
NCBI-ProteinID: ADK80027
UniProt: E1RCE7
LinkDB
Position
940039..942600
AA seq 853 aa
MDGKTLVIVESPTKARTIKRFLPKNFIVEASVGHVRDLPQSASDIPKELKKEEWGRLGID
IDNQFRPLYVIPRGKGKIIRELKKRIKEVDLVLLATDEDREGESISWHLTEVLQPKVPVK
RMVFHEITKKAIERALENERAIDMDLVNAQETRRILDRLYGYTLSPLIWKKIAYGLSAGR
VQSPGLRLIVQRERERISFVKSVYWDIKAELFPEDEKKSFEAKLESLDGSRIAGGKDFDP
ATGKLLPNKKNVVVVDEATARSLEKELADVRWAVSELSEKHSKTRPAPPFITSTLQQEGN
RKLRMSARETMRTAQRLYEQGFITYMRTDSPTLSAEALQGARSAVQELYGKEYLSEAPRQ
YAAKSKGAQEAHEAIRPAGERFRHPDETALSGREKSLYTLIWKRTLASQMAEARKVSVTA
KIDAGRTRFSATGTRIEFPGFIRVYVEGKDDPEAALDDKETFLPPLAEGQELSLKGLESL
VHETKPPARFTEATLVRELESLGIGRPSTYATIINTLFERQYVRKQGNALVPTFTGFAVV
QLLERHFQEMIEYSFTSDMEAALDQIAVGKRNRLEYLTSFYLGDSGLKARVEHREKAIKP
EESRTIDLPHITEGIKVGKYGPYLVQHHDGEEVHASIPEDIAPADLREEEIQELIRAQKN
GPEPLGSDPESGEPVYCLTGRYGPYVQLGEKSDDNPKPRRAAVPKGLKPSEVTLELAIQR
LSLPRALGINPATGKEVLVNDGRFGPYVLHDGEFRSLKKDDDLFTIGLDRALEILAEPKR
GRGGVSVLKDFGAIADGGRKVAVYDGKYGPYIKCGAKNIRLPDDKRETEAIEKLSSEEVL
EIINTASKAKGKK
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggacggaaaaacactggtaattgtcgagtctccaacgaaagcacgcacgataaaacgc
tttcttccgaagaatttcattgttgaagcaagcgtcggtcatgttcgtgatcttcctcaa
tcagcctcagatattccaaaagagttaaagaaggaggaatggggtcgcctcggtatcgat
atcgataatcaattccgtcccttatatgtcattccccgggggaagggtaagattatccgc
gagctaaagaaacggatcaaagaggttgatctcgtgctgcttgccactgatgaagatcgt
gagggagagagcatatcgtggcatcttaccgaggtgctgcaacccaaggtgccggtgaaa
cgcatggtttttcatgagattaccaaaaaggcgattgaacgggcattggagaatgaacgc
gctatcgacatggacctggtcaatgcccaggaaactcgacgtattctcgatcgtctctac
ggttataccctaagtccccttatctggaagaaaattgcctatggtctttctgccggtcgg
gttcagagccccggcctgcgtctcattgttcaaagggaacgggaacgaatttcctttgtg
aagtctgtatattgggatataaaggctgaactctttcctgaggatgaaaagaagagtttc
gaggcgaaacttgaatccctcgacggcagcagaattgccgggggtaaagacttcgatcct
gccactggtaagctgctgccaaataaaaagaatgttgtcgttgttgatgaagccactgcc
cgaagcctggaaaaggagcttgccgatgtccggtgggccgtctccgagctctcggagaag
cattccaagacacggcctgcacctccctttatcaccagtacccttcagcaggagggaaac
cggaaactgcgaatgtcggcacgggagaccatgcgcaccgctcagaggctctatgagcag
ggctttatcacctacatgagaaccgactctccgacccttagcgccgaggcccttcagggg
gctcgtagtgcggttcaggagctttatgggaaggagtatctctctgaagccccccgtcag
tatgctgcaaaatccaagggggcgcaggaggctcatgaggcaattcgtccggctggagag
cgtttccgtcatcccgatgaaacggctctttccggcagggaaaaatccctgtacaccttg
atttggaaacggacccttgccagtcagatggccgaggcacgaaaggtctctgtcactgca
aagatcgatgccggacggacgcggttttcggcaacaggaacgagaatcgagtttcccgga
tttatccgcgtctacgtagagggcaaggatgaccccgaagcggctctcgacgacaaagag
acgtttcttcctcctctggccgagggacaggaacttagcctgaaggggcttgaaagtctt
gtccatgagaccaagcccccagcccgctttaccgaagccaccctggtgcgggagcttgaa
agtcttgggatcggccgtccttctacctatgctaccatcatcaacaccctatttgagcga
caatatgtgcgtaagcagggaaatgcactggttcccacctttaccggttttgccgttgtg
cagctccttgagcgccatttccaggaaatgatcgaatatagctttacaagcgacatggaa
gctgctctcgaccagattgccgtgggaaagcggaatcgacttgagtacctgacttccttt
tatttgggagattccggactaaaagcgcgggtcgagcatcgtgaaaaggcgattaaaccc
gaggagtcgcgtaccatcgacttgccgcatatcacggagggcatcaaggtcggtaaatat
ggcccctaccttgtgcagcaccatgatggtgaagaggtccatgcctccattccggaagat
atcgctcctgcggatctccgtgaagaggagatccaggagttgattcgggcccagaaaaac
ggaccggaaccccttggcagcgaccctgaaagcggtgaacctgtctactgcctgaccggt
aggtacggcccttatgtccagcttggtgaaaagagtgacgacaatcccaagcctagacgt
gctgccgttcccaaagggctaaagccttcggaggtcacgcttgagcttgctatccagcgc
ctgagtcttcctcgggcactgggtatcaacccggcaaccggcaaagaggttttggtgaac
gacggtcgcttcggaccctatgtcctccatgacggagaattccgttcgttgaagaaagat
gacgatctttttacgataggcctcgatcgggccctcgagattcttgccgaaccgaagcga
ggtagggggggcgtttccgttctgaaggattttggagccattgctgatggagggcgcaag
gttgccgtatacgacggaaagtacggaccgtatattaaatgcggtgcaaagaacattcgt
cttccggatgacaaacgagagacggaggcgatcgaaaaactttcttcggaagaggtcctt
gaaattatcaatacggcttctaaggccaagggaaagaagtaa

DBGET integrated database retrieval system