Sediminispirochaeta smaragdinae: Spirs_0893
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Entry
Spirs_0893 CDS
T01287
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssm03032
]
Spirs_0893
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_0893
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Spirs_0893
DNA replication proteins [BR:
ssm03032
]
Prokaryotic type
DNA Topoisomerases
Spirs_0893
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Spirs_0893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF2064
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ADK80027
UniProt:
E1RCE7
LinkDB
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Position
940039..942600
Genome browser
AA seq
853 aa
AA seq
DB search
MDGKTLVIVESPTKARTIKRFLPKNFIVEASVGHVRDLPQSASDIPKELKKEEWGRLGID
IDNQFRPLYVIPRGKGKIIRELKKRIKEVDLVLLATDEDREGESISWHLTEVLQPKVPVK
RMVFHEITKKAIERALENERAIDMDLVNAQETRRILDRLYGYTLSPLIWKKIAYGLSAGR
VQSPGLRLIVQRERERISFVKSVYWDIKAELFPEDEKKSFEAKLESLDGSRIAGGKDFDP
ATGKLLPNKKNVVVVDEATARSLEKELADVRWAVSELSEKHSKTRPAPPFITSTLQQEGN
RKLRMSARETMRTAQRLYEQGFITYMRTDSPTLSAEALQGARSAVQELYGKEYLSEAPRQ
YAAKSKGAQEAHEAIRPAGERFRHPDETALSGREKSLYTLIWKRTLASQMAEARKVSVTA
KIDAGRTRFSATGTRIEFPGFIRVYVEGKDDPEAALDDKETFLPPLAEGQELSLKGLESL
VHETKPPARFTEATLVRELESLGIGRPSTYATIINTLFERQYVRKQGNALVPTFTGFAVV
QLLERHFQEMIEYSFTSDMEAALDQIAVGKRNRLEYLTSFYLGDSGLKARVEHREKAIKP
EESRTIDLPHITEGIKVGKYGPYLVQHHDGEEVHASIPEDIAPADLREEEIQELIRAQKN
GPEPLGSDPESGEPVYCLTGRYGPYVQLGEKSDDNPKPRRAAVPKGLKPSEVTLELAIQR
LSLPRALGINPATGKEVLVNDGRFGPYVLHDGEFRSLKKDDDLFTIGLDRALEILAEPKR
GRGGVSVLKDFGAIADGGRKVAVYDGKYGPYIKCGAKNIRLPDDKRETEAIEKLSSEEVL
EIINTASKAKGKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggacggaaaaacactggtaattgtcgagtctccaacgaaagcacgcacgataaaacgc
tttcttccgaagaatttcattgttgaagcaagcgtcggtcatgttcgtgatcttcctcaa
tcagcctcagatattccaaaagagttaaagaaggaggaatggggtcgcctcggtatcgat
atcgataatcaattccgtcccttatatgtcattccccgggggaagggtaagattatccgc
gagctaaagaaacggatcaaagaggttgatctcgtgctgcttgccactgatgaagatcgt
gagggagagagcatatcgtggcatcttaccgaggtgctgcaacccaaggtgccggtgaaa
cgcatggtttttcatgagattaccaaaaaggcgattgaacgggcattggagaatgaacgc
gctatcgacatggacctggtcaatgcccaggaaactcgacgtattctcgatcgtctctac
ggttataccctaagtccccttatctggaagaaaattgcctatggtctttctgccggtcgg
gttcagagccccggcctgcgtctcattgttcaaagggaacgggaacgaatttcctttgtg
aagtctgtatattgggatataaaggctgaactctttcctgaggatgaaaagaagagtttc
gaggcgaaacttgaatccctcgacggcagcagaattgccgggggtaaagacttcgatcct
gccactggtaagctgctgccaaataaaaagaatgttgtcgttgttgatgaagccactgcc
cgaagcctggaaaaggagcttgccgatgtccggtgggccgtctccgagctctcggagaag
cattccaagacacggcctgcacctccctttatcaccagtacccttcagcaggagggaaac
cggaaactgcgaatgtcggcacgggagaccatgcgcaccgctcagaggctctatgagcag
ggctttatcacctacatgagaaccgactctccgacccttagcgccgaggcccttcagggg
gctcgtagtgcggttcaggagctttatgggaaggagtatctctctgaagccccccgtcag
tatgctgcaaaatccaagggggcgcaggaggctcatgaggcaattcgtccggctggagag
cgtttccgtcatcccgatgaaacggctctttccggcagggaaaaatccctgtacaccttg
atttggaaacggacccttgccagtcagatggccgaggcacgaaaggtctctgtcactgca
aagatcgatgccggacggacgcggttttcggcaacaggaacgagaatcgagtttcccgga
tttatccgcgtctacgtagagggcaaggatgaccccgaagcggctctcgacgacaaagag
acgtttcttcctcctctggccgagggacaggaacttagcctgaaggggcttgaaagtctt
gtccatgagaccaagcccccagcccgctttaccgaagccaccctggtgcgggagcttgaa
agtcttgggatcggccgtccttctacctatgctaccatcatcaacaccctatttgagcga
caatatgtgcgtaagcagggaaatgcactggttcccacctttaccggttttgccgttgtg
cagctccttgagcgccatttccaggaaatgatcgaatatagctttacaagcgacatggaa
gctgctctcgaccagattgccgtgggaaagcggaatcgacttgagtacctgacttccttt
tatttgggagattccggactaaaagcgcgggtcgagcatcgtgaaaaggcgattaaaccc
gaggagtcgcgtaccatcgacttgccgcatatcacggagggcatcaaggtcggtaaatat
ggcccctaccttgtgcagcaccatgatggtgaagaggtccatgcctccattccggaagat
atcgctcctgcggatctccgtgaagaggagatccaggagttgattcgggcccagaaaaac
ggaccggaaccccttggcagcgaccctgaaagcggtgaacctgtctactgcctgaccggt
aggtacggcccttatgtccagcttggtgaaaagagtgacgacaatcccaagcctagacgt
gctgccgttcccaaagggctaaagccttcggaggtcacgcttgagcttgctatccagcgc
ctgagtcttcctcgggcactgggtatcaacccggcaaccggcaaagaggttttggtgaac
gacggtcgcttcggaccctatgtcctccatgacggagaattccgttcgttgaagaaagat
gacgatctttttacgataggcctcgatcgggccctcgagattcttgccgaaccgaagcga
ggtagggggggcgtttccgttctgaaggattttggagccattgctgatggagggcgcaag
gttgccgtatacgacggaaagtacggaccgtatattaaatgcggtgcaaagaacattcgt
cttccggatgacaaacgagagacggaggcgatcgaaaaactttcttcggaagaggtcctt
gaaattatcaatacggcttctaaggccaagggaaagaagtaa
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