Sediminispirochaeta smaragdinae: Spirs_2033
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Entry
Spirs_2033 CDS
T01287
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_2033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_2033
03016 Transfer RNA biogenesis [BR:
ssm03016
]
Spirs_2033
Enzymes [BR:
ssm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Spirs_2033
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Spirs_2033
Transfer RNA biogenesis [BR:
ssm03016
]
Prokaryotic type
tRNA degradation factors
Spirs_2033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADK81155
UniProt:
E1R1L4
LinkDB
All DBs
Position
2187309..2189402
Genome browser
AA seq
697 aa
AA seq
DB search
MPHQVTVSIGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVE
YNEKYYAAGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQ
INPPDIVAMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGT
KDGITMVEGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPLVVEEKKLER
RQEMWDFAYPKMEEACFVKGKMNRGAAVKAVKTETAEAFADDLNEDNERLFNALMEEMET
KVVRSSILDKGVRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDE
QMMDNIDGDKTYENFMLHYNFPPFSVGETGRLTTGRREIGHGHLAHRALEAVLPQKKDFP
YTIRVVSEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAVLTDIL
GEEDHLGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATLK
EPVSDVSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSEVNIDDNGTVTIFGKTK
EKAEKAREFIKAIVEEPEVGKIYEGTVKRIMDFGAFVEILPGKEGLCHISKLSRKRVNSV
SDVLAVDQKIPVKLIEIDRQGRLNLSYIDALEAEEAK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcaagtaacagtttctatcggtggaagggatttgattctggaaaccggacga
atggcgaagcaggcaaacggtgccgtatttgccaaatatgagggtagtgcggttcttgca
accgtctgctgcggaagtagtcccatggagagtcttgattttgtacctctccaggtagaa
tataatgagaaatattatgccgccgggaagatacccggtggctttctaaaacgggaagga
cgaccgaaggataaagaaattctcgtaagtcgtcttatcgatcgccctatgaggcctctt
ttttccaaagaattcaagcgggaactccaaatcatcccgacaacggtgagtgcggatcag
attaatccacccgatattgttgccatgaacgccgcaagtgctgcggtctgcgtatctgat
attccctttgccggtcccgtgggtgccgtacgtattgccaatgtcgacgatgagctgatc
atcaacccaagcttcgaccagatatcccgatgcaccttggaaatagtggtaagtggtacc
aaagatggtattaccatggtagaaggtggtgcaaaagaggtacctgaagaactcctgctg
tcggccatcgcacttgccgaaccggccatcaaaaagctttgtgaagctcaggaacagctt
atggctctggcaggcaaagagaaacttccactggtcgttgaagagaagaaacttgaaaga
cgacaggagatgtgggatttcgcttatcccaagatggaagaggcctgttttgtaaagggc
aagatgaaccgaggtgctgccgttaaggccgtgaagacggaaacggcggaggcctttgcc
gacgatttgaatgaagataatgaacgtctttttaatgctctgatggaagagatggaaaca
aaggtagtccgcagctctattcttgataagggagtgcgaaccgacggacgggacctcgaa
accgttcgccccatcacctgtgaagtgggaattcttgacagagcccacggaagtgccctc
tttaccagaggcgagacccagtcccttgcggtgacgaccctgggaaccgtctacgacgag
cagatgatggacaatatcgatggtgataagacctacgaaaatttcatgctccattacaac
ttcccacccttttcggttggagaaacgggacgccttaccacaggaagacgggagataggc
catgggcacctggcccacagagccctcgaagccgttttacctcagaaaaaggattttccc
tataccatacgcgtggtaagcgagattctcgaatccaacggctcttcttccatggctacg
gtttgcggcggaaccttgagtctgcttcatgcaggagttcccatacgaaagcctgtcgcg
ggtattgccatgggcttggttagtgaaggggatcgggcagccgttctcaccgacatcctt
ggtgaggaagatcacctcggtgacatggattttaaggttgccggaaccgaagacggtata
accgcctttcagatggatataaaaatcgctggaatatcaagcgatctgatgaaacgtgct
ctcgagcaggccaaaaagggcagaatgcatatcctcggtatcatgaatgcgaccctcaaa
gaaccggtaagtgatgtctccgactttgccccgaagattctttccttgaaggtcgatgtc
gacaagattggtgccattatcggccccgggggaaaaaccataaaagccattgccgaacag
agcggttccgaggtcaatattgatgataacggtaccgttacaatcttcggaaagacaaaa
gaaaaggccgagaaggccagagaatttatcaaggcaattgtggaagaacccgaagtagga
aagatctatgagggaacggtcaagcgtatcatggatttcggtgctttcgttgaaattctt
cccggtaaagagggcttatgccacatctcgaagctctccagaaaacgggtgaattcggta
agcgatgttctggccgttgatcagaagattccggtgaagttgattgagatcgatcgacag
ggtcggctcaatctcagctacatcgatgctttggaagccgaagaggcgaaataa
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