Sediminispirochaeta smaragdinae: Spirs_2331
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Entry
Spirs_2331 CDS
T01287
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spirs_2331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_2331
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spirs_2331
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spirs_2331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADK81446
UniProt:
E1R1S0
LinkDB
All DBs
Position
complement(2495168..2497168)
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AA seq
666 aa
AA seq
DB search
MMEGEGFKLVSDYAPSGDQGAAIDALADGLSNGLRYQTLKGVTGSGKTFTMANIIRRAQL
PTLVLSHNKTLAAQLYRELQGFFPNNAVEYFVSYYDYYQPEAYVPSKDLYIEKDSSINEE
IDRLRLSATSSLMERSDVIVVSTVSCIYGLGSPVAYRDMRVKATVGESLNIASFARDLIR
LQYDRNDAVLERGTFRIRGDVLEVFPAYLQEAFRMELDWDEVVRIRRIHPLTGDTIEELD
SVQIYPAKHFVMPEEQVHTALERIRRELKDQLEYFEHRGKLLEAQRLRGRTEYDLEMLQE
MGYCSGIENYSAPLSGRGEGQRPAVLLDYFPEKFLTFIDESHVTLPQVGAMYEGDRSRKM
NLVEHGFRLPSALDNRPLFYAEFEELVDRVIYVSATPGKLEKRRSERLVEQIIRPTGLLD
PELEVRPTKGQIEDLYAEIRKRVECNERTLVTTLTKKMSEDLTDYLSGLGLKVRYLHSEI
ETIERVEILRDLRLGTFDVLIGINLLREGLDLPEVSLIAILDADKIGFLRSATSLIQTIG
RAARNEHGKVIMYADRISDAMKEAIGETERRRAIQEAYNEEHGITPTTIKKAVQDILVRK
KEEAKKGETETIEMVKAGYNILIPAERKRLIRHLEEMMLEHAKNLEFEQAAVVRDEIGRL
KELGKT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaggtgagggctttaaacttgtttcagactatgctccgtcaggggatcaaggg
gctgcgatcgatgctttggccgatggactttcgaacggacttcgctatcagacccttaag
ggggtaacaggctcggggaagacctttaccatggctaatatcatccggagagcccagctt
cccacccttgtcctgagccataataaaacccttgcggcacagttgtatcgggagttgcag
ggattcttcccgaataatgccgtcgagtactttgttagttactacgattactatcagccc
gaggcatatgttccctccaaggatctctatatcgaaaaggattcttcgataaatgaggag
atcgatcgtctccgcttatctgctacaagcagtctcatggagcgcagcgatgtcatagtc
gtttcgacggtaagttgcatctacggccttggaagtcccgtcgcctaccgcgatatgcga
gtaaaagctaccgttggcgaatccctgaatatcgcctcctttgccagggacctgattcgt
ctccagtacgacagaaacgatgccgttcttgaacgggggaccttccgtattcggggcgat
gtcctagaggtatttcctgcctatctccaggaagcctttcgcatggagctcgattgggat
gaagtggttcgtatcagacgaattcatcccctgactggtgataccatcgaggagctcgat
tccgttcagatctatcccgctaagcactttgtgatgccggaagagcaggtacacactgcc
cttgagcgtattcgcagagagctgaaagatcaactggaatactttgaacatcggggaaag
cttcttgaggcgcaacgccttaggggaagaacggagtacgatttggagatgcttcaagag
atgggctattgttccggcatagaaaactattcggcacccctttccggacgaggtgaaggg
cagaggcctgccgtgcttctcgattatttcccggagaagtttcttaccttcatcgatgaa
agccatgtcaccctacctcaggtaggggccatgtacgagggagaccgttcacgaaaaatg
aatctggtcgagcacggtttcaggcttccttctgctctggataatcgccctcttttctac
gccgaattcgaggagctggtagaccgtgtcatctatgtgtctgccaccccggggaaactt
gaaaagcggcgctcagagaggctcgtagagcagatcattcgtcccacagggctcttggat
cctgagttggaggtccgcccgacaaaggggcagattgaggatttatatgcggaaatccgc
aagcgcgtcgaatgcaatgaacggacattggtaacgacccttaccaagaagatgtcggag
gatctgacggactatctttcaggactcggccttaaggtccggtacctccattcggagatt
gagaccatagaacgggttgagatcctgcgggacctgcgtctgggaaccttcgatgtactt
atcggcattaacctcttgcgggaggggcttgatttaccggaagtctcacttattgcgatt
ctcgatgccgataagatcggttttttgcggtcggcaaccagcctcatacagacaatcggt
cgggctgcacgaaacgaacatggaaaggtcatcatgtatgccgatagaatttccgacgca
atgaaagaagcaataggcgagaccgaacgtcgtcgggcaattcaggaggcttataacgaa
gagcacggtatcactcccactaccatcaagaaggcagtacaggatattcttgtacgaaaa
aaagaagaggcaaagaagggtgagacagagaccatcgagatggtcaaggccggttataat
atccttattcccgccgaacgaaaacgattgatccgccaccttgaggagatgatgcttgag
catgcaaagaatctcgaattcgagcaggccgccgttgttcgtgatgagatcggacgcctg
aaagagcttggaaaaacgtaa
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