Streptococcus salivarius CCHSS3: SALIVB_0093
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Entry
SALIVB_0093 CDS
T01580
Symbol
polC
Name
(GenBank) DNA polymerase III polC-type (PolIII)
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ssr
Streptococcus salivarius CCHSS3
Pathway
ssr03030
DNA replication
ssr03430
Mismatch repair
ssr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALIVB_0093 (polC)
03430 Mismatch repair
SALIVB_0093 (polC)
03440 Homologous recombination
SALIVB_0093 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssr03032
]
SALIVB_0093 (polC)
03400 DNA repair and recombination proteins [BR:
ssr03400
]
SALIVB_0093 (polC)
Enzymes [BR:
ssr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SALIVB_0093 (polC)
DNA replication proteins [BR:
ssr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SALIVB_0093 (polC)
DNA repair and recombination proteins [BR:
ssr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SALIVB_0093 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
HHH_3
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
B
YhfH
Motif
Other DBs
NCBI-ProteinID:
CCB92426
LinkDB
All DBs
Position
74469..78863
Genome browser
AA seq
1464 aa
AA seq
DB search
MSDNFQLLLKQIRFPEEHDAFKEIKDGSIETVKLFKSKRQWFFVFSFPSVLSYESFVLFD
SLLHSSFDSLGAKASFEIRLLSTSCDDSLLGDYFSHALDGLKVSHFSIYSLFSNLKVEIS
NNSICVKAPAHIIKENLQDRFISLISKSLSQVGLSDVSISVLEDKEASSSIEEAYETNKV
SLQEQAESQARQALQSILESAPAPRPVNEPAQNFAEKQSQRQASFDKAEITPMVDINSEE
NRVVFEGYIFDVEQRETKTGRIIINFKVTDYTSSFAMQRWVKDSDELAKFDMIKKGNWVR
VRGRIENNPFTHSLTMNVQDIKEISHTPRKDLMPEGQKRVEFHAHTNMSTMDAMPTVEEL
IDTAASWGHPAVAIADHANVQSFPHGYHRAKKAGIKAIFGLEANLVEDKVPIVYNSQNLE
LKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQFDEFIDPGHPLSAFTTELTGI
TDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLE
FARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQ
LNTDLVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNVSYFEGVARIPRTVLDEYRE
GIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEVAIEQ
LIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPAP
LPEAHFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMAEQIEEVEVVKKDLYTPFIDRAEEQ
VAEMTYARAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNRSNERGYLVGS
RGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPDKECSECGTEYK
KDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRT
AYGFVKGYERDYNKFYRDAEVDRLAMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYP
ADDVTAAWQTTHFNFHDIDENVLKLDILGHDDPTMIRKLQDLSGIDPKDIRADDPDVMKL
FSGTDILGVTPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWL
GNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEERNG
YIQAMRENNVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRA
KAFELKTMSAGLDAVKARMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTFGQLDL
YKSQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKRGGLSSTLVE
KLDEMGILGNMPEDNQLSLFDDFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataattttcagcttctcttaaaacaaattcgttttcctgaggaacacgatgct
tttaaagaaattaaagatggttctatcgaaactgtaaaactatttaaatcaaaacggcag
tggttttttgttttttctttccctagtgttctttcttatgagtcttttgtgctttttgat
agtttacttcattcttccttcgattctttaggtgctaaagcttcttttgagattcgttta
ctttctacttcttgcgatgattctttacttggagattatttttcacatgccttagatggt
ttaaaagtttctcacttttctatttattctttattctcaaatctaaaggttgaaatttca
aataatagtatttgtgttaaggctccagcgcatattattaaagaaaatttacaggataga
tttatttctttgatttctaaatctctttctcaagttggtttatctgacgtatcaatttct
gttcttgaagataaggaagcgtcatcttctatagaagaggcttacgaaacaaacaaggtt
tctttgcaagaacaagctgaatctcaggcaagacaggctcttcaatctattcttgagagt
gctccagcaccgagacctgtgaatgaaccggcccaaaattttgctgagaaacaaagtcaa
cgtcaagctagttttgataaggctgaaataacgccaatggttgatattaattctgaagag
aatcgtgttgtttttgaaggatatatttttgatgtagagcaacgtgaaactaagacgggt
cgaattattattaatttcaaggtaactgattatacctctagttttgcaatgcagcgctgg
gtcaaagatagtgatgagcttgctaagttcgatatgataaaaaaggggaactgggtaaga
gttcgcggtcgtattgagaataatcctttcactcatagtctgacaatgaatgtacaagat
atcaaagagatttcgcacacacctcgcaaggatttgatgcctgagggacaaaagcgtgtg
gaatttcatgcacatactaacatgtcgactatggatgccatgccaactgtggaagagctt
attgatactgctgcttcttgggggcatccagctgttgctatagctgatcacgctaatgtt
cagagttttcctcatggctaccatagggctaagaaagctggtattaaagctatttttggt
cttgaagccaatcttgttgaggataaagttcctattgtttataattcccagaatttggaa
ttaaaagaagctacttatgttgtatttgacgttgagacaacgggcttgtctgctgttcat
aatgatttgattcagattgcggcatcaaaaatgcataaaggtaatattattgagcaattt
gatgaatttatagacccagggcatcctctttctgcttttactactgagttgacaggtatt
actgataatcatgtaaaaggtgctaaacctttagtccaagttttacaggagtttcaagaa
ttctgtcaaggaactgtgctagtagcccataatgcgacttttgacgttggttttatgaat
gccaattatgaaagacatcagttaccaacaatttcacaaccagttattgatactttagaa
tttgcacgaaatctttatcctgagtataagcgtcatggtttgggtcctttgacgaagcgg
tttggtgtggctttggatcaccaccacatggccaattatgatgcggaagcaacgggccgt
ttgttgtttatcttcataaaagatgtgtttgataagcacggtttgactaatttggaacag
ttgaacacggatttggtttctgaagattcgtataaaaagtctcgtgttaaacatgcgaca
ctgtatgttcagaatcaaactggcttgaagaatatctttaagttggtaagtttatcaaat
gtctcatactttgagggggtagcacgtattcctcgtacggtcttagatgagtatcgtgag
ggaatcattgtaggttctgcttgtgctgatggtgaggtttttgatacgcttctgtctcat
ggtattgacaaggcagttgaagttgctaaatattatgactttattgaagttatgccacca
gcgatttatgcaccattgattgcgaaggacttaattaaggatgaggtggctatagaacaa
ctgattcgagatttgattgaagtcgctaatcgtctggacaagcctgtgcttgctacagga
aatgtacattatatcaatcctgaggatgcgatttatcgtgaaatcattgttcgtgcttta
ggacaaggagcaatgattaataggccaatcggtaagggagaaaatgcgaaacctgctcct
ttacctgaagcgcattttagaacaacgaatgagatgctagatgactttgcctttttggga
aaagacttagcctatgaaattgttgtaactaatacgcaggctatggcagaacaaattgaa
gaggtcgaggttgtcaaaaaagacttgtacacacctttcattgatcgtgcggaagaacag
gttgcggagatgacatatgctagagcgtttgagctctatggtaatcctttacctgatatt
attgatctgcgaattgagaaagagttgtcctcaattcttggtaatggctttgccgtaatt
tacctggcttcgcagatgctggttaaccgttcaaatgaacgtgggtacctagttggttcg
cgtggatctgtcggttctagttttgttgcgacgatgattggaattactgaggttaatccg
atgccgccacactatttatgtcctaaatgtcaacactcggagttcattacagatggttct
tatggatctggcttcgatttgcctgataaggagtgttcggaatgtggaacggagtataaa
aaagatggtcaggatattcctttcgagactttcctaggttttgatggggataaggttccg
gatatcgatttgaacttttccggtgatgatcaaccatcagcccacttggatgttcgtgat
atttttggagagcaatatgcttttcgtgctggaacagtaggtactgttgcagatcggacg
gcttatggttttgtcaaaggttacgaacgtgactacaataagttttaccgagatgccgag
gtcgatcgtctggccatgggtgccgctggggttaagcgaaacacaggtcagcacccgggt
ggtatcgttgttattccaaattatatggatgtctatgatttcacacctgttcaatatccg
gctgatgatgtaacggctgcctggcagacgactcactttaatttccacgatatcgatgag
aacgtgttgaagcttgatattctgggacatgatgatccgactatgattcgtaagttgcag
gatttatcgggaattgatccaaaagatattcgagcagatgatccagatgtgatgaaactt
ttttcagggactgatattttaggggtaacacctgaacagattgggacaccaacgggaatg
ttaggaatccctgagtttgggactaactttgttcgtggtatggtagacgagacgcatccg
acgacctttgcggaactcttacagttatctggtttgtctcatggtacagacgtttggttg
ggtaatgcacaagatttgatcaaggaaggtattgctactctgaaaaccgttatcggttgt
cgtgacgatatcatggtatacctaatgcatgcgggattggatcctaagatggccttcacc
attatggaacgtgtgcgtaagggaatgtggttgaaaatttctgaagaagagcgaaatggc
tatattcaagccatgcgtgaaaataatgttccagactggtatattgaatcttgcggtaaa
atcaaatacatgttccctaaagcccatgcggcagcctacgttatgatggccctgcgtgta
gcttatttcaaagtgcaccatcctatttattactattgtgcctacttttcaattcgagct
aaagcattcgagcttaaaacgatgtctgcgggtctcgatgctgttaaagctcgaatggaa
gatattaaggagaagcgccaacgaaatgaagcgactaatgttgaaaatgacttatttacg
acgcttgagattgtcaatgaaatgttagaacgtggctttacctttggtcagttggatctt
tataagagtcaggcaactgaatttctgattgaaggagatactttgattccaccgtttatt
gcacttgaaggtttgggtgagaacgttgctaagcaagtggttgctgcgcgtgaggaaggt
gaattcctttccaagacagaattgcgtaaacgaggaggtctatcatctaccttggttgaa
aaattggatgaaatgggaatcctaggaaatatgccagaagataatcaattaagtcttttt
gatgatttcttttaa
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integrated database retrieval system
