Sphingobium sp. SYK-6: SLG_05140
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Entry
SLG_05140 CDS
T01622
Name
(GenBank) putative helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLG_05140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssy03019
]
SLG_05140
Messenger RNA biogenesis [BR:
ssy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SLG_05140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
Motif
Other DBs
NCBI-ProteinID:
BAK65189
NITE:
SLG_05140
UniProt:
G2ILC6
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All DBs
Position
complement(537780..539591)
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AA seq
603 aa
AA seq
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MSYFSDLGLAEPLLRALETKGYADPTPIQQQAIPALLEGRDLLGIAQTGTGKTAAFSLPS
LHRLIGNAQARKPASCRMLVLSPTRELTAQIAENMRGYAKYLNLSVQVVFGGVPVGKQAR
ALVPGCDILVATPGRLLDLIEQRALTLRNVEIFVLDEADQMMDLGFIQPLKRIAGMLPKE
RQSLFFSATMPQAIADLGKQFIHNPVKVEVAPQSTTAERVEQYATFVEQQEKQALLTLRL
REAIASGALDRALVFTRTKHGADRVARHLVAAQISAAAIHGNKSQGQRTAALKGFRDGSV
QILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAMSFVAPDERPY
LRDIERLTRVKLEQMPLPENFVVEARRLPLPSKKAIEQAVGDSAPGRNAGNSARQGRRPQ
RARHGERGAPAQADRRQDGHAPRPERQDRRPARAEQAAPQGEGRRERPLIEIRIEGRGRP
AWSERTPEGGRDHASRDGRPQRRGPEGNERGGRNGQRHDGARQGEARGGGQGRPNFDPLA
VYGDQPARRDGEQLPKRMREGAPAGGEAERGPRRDGGQRRFGNGRPQGNAGGGGRRSRAG
RSG
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttttccgaccttggtcttgccgagcccctccttcgcgcgctcgaaaccaag
ggctatgccgacccgacgccgatccagcagcaggcgattcccgcgctgctcgaagggcgc
gacctgctgggcattgcccagacgggcaccggcaagaccgccgctttctccctcccctcg
ctgcaccggctgatcggcaatgcgcaggcccgcaagccggcctcctgccgcatgctggtg
ctctcgcccacgcgcgagctcaccgcgcagatcgccgagaacatgcgcggctatgccaaa
tatctgaacctttccgtgcaggtcgtcttcggcggcgtgccggtgggcaagcaggcgcgc
gcgctggtgccgggctgcgacatcctcgtcgccacgccgggccgcctgctcgacctgatc
gagcagcgcgcgctcacgctgcgcaatgtcgagatcttcgtgctcgacgaggccgaccag
atgatggacctcggcttcatccagccgctcaagcgcatcgccgggatgctgcccaaggag
cggcagagcctgttcttctccgccaccatgccgcaggccatcgcggacctgggcaagcag
ttcatccacaatccggtgaaggtggaagtcgcgccgcaatcgaccactgccgagcgggtg
gaacaatatgccaccttcgtcgagcagcaggagaagcaggcgctgctgaccctgcgcctg
cgcgaggcgatcgcctcgggcgcgctggaccgggcgctcgtcttcacccgcaccaagcat
ggcgcggaccgcgtggcacgccacctcgtcgccgcccagatcagcgccgccgccatccac
ggcaacaagagccagggccagcgcaccgccgcgctcaagggcttccgtgacggcagcgtc
cagatcctcgtggcgaccgacatcgcggcgcgcggcatcgacgtctcgggcgtctcgcat
gtgttcaacttcgagctgcccaacgtgcccgagcaatatgtccaccgcatcggccgcacg
gcgcgcgcaggcgcagacggcatcgcgatgagcttcgtcgcgccggacgagcgcccctat
ctgcgtgacatcgagcggctgacccgcgtgaagctggagcagatgccgctgcccgagaat
ttcgtggtcgaggcacggcgcctgccgctgccctccaagaaagccatcgagcaggccgtg
ggcgacagcgccccgggccgcaatgccggcaatagcgcgcgccagggccgtcgtccgcag
cgcgcacgccatggcgagcgcggcgcaccggcacaggccgaccgccggcaggacgggcat
gcaccccggcccgagcggcaggatcgccggcccgcccgcgccgagcaggccgccccgcag
ggcgagggccgtcgcgagcggccgctgatcgagatccgcatcgaaggccgcggccgcccg
gcctggtccgagcgcacgcctgagggcggtcgggatcatgcgagccgcgatggccgcccc
cagcgtcgtggccccgagggcaacgagcgcggcggccgcaacggacagcgccacgacggc
gctcgccagggcgaggcacgcggtggcgggcagggccgcccgaacttcgatccgctggcc
gtctatggcgatcagccggcccggcgcgacggcgagcaactgcccaagcggatgcgcgaa
ggcgcgcccgccggtggcgaagccgagcgtggcccgcgccgcgacggcggccagcgccgc
ttcggcaatggccgtccgcagggcaatgccggtggcggcgggcgccgcagccgggctggc
cggagcggctga
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