Sphingobium sp. SYK-6: SLG_28450
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Entry
SLG_28450 CDS
T01622
Name
(GenBank) putative uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SLG_28450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_28450
Enzymes [BR:
ssy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SLG_28450
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SLG_28450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
BAK67520
NITE:
SLG_28450
UniProt:
G2IKW8
LinkDB
All DBs
Position
complement(3075967..3077415)
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AA seq
482 aa
AA seq
DB search
MTARPGATSRQHCILVERPDDLEAWREQARALAAAGVAPEHVIWSLQSSGAADLFGGAAA
PAACLSSLAAPLAVRANEAFLGLAQVVIRHRDAARFALLYRLLWRLQGDRRLMEKPADPD
VHRAIAMGRQVRRDIHKMRAFARFRAVTEPDGGERYIAWFEPEHHVVRANARFFLDRFAS
QRWSILTPDLCLHWDGESLVEAPGADPRDAPREDATEDLWQRYYASIFNPARLKVGMMVK
EMPRRYWKNLPEAQLIPQLIAGAQAREAAMVAQGADPFPAAPPGTLEEIAQGIAACRRCP
IGCNGTRAVPGEGPAQARLLIVGEQPGDSEERAGRPFVGPAGQLLDRHLQQAGLDRASIR
LTNAVKHFRFEPRGKRRIHQTPTAGQIDRCRWWLEAERRLVKPDMVLALGASAGRALLGR
APRLADERGTAMRLADGAGLWLTVDPSYLLRLDGAARDREEARFQDDLARLRIMLEEPAA
TP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgcgcggcccggcgccaccagtcggcagcactgcatcctcgtcgagcggcccgat
gacctggaagcctggcgggagcaggcgcgcgcgctggcggcagccggcgtggcgcccgag
catgtcatatggtccttgcagtcctccggcgcggccgatctgttcgggggcgccgctgcg
cccgccgcctgcctttcatcactggcggcgccccttgccgtgcgcgcgaacgaagccttt
ctcgggctcgcgcaggtcgtgatccggcatcgcgatgcagcccgtttcgccttgctctat
cgcctgctctggcggctgcagggagatcgccggctgatggaaaagccggccgatcccgac
gttcatcgggccatcgccatgggccggcaagtccggcgggacatccacaagatgcgcgca
ttcgcgcggttccgggccgtcacggagccggacgggggcgagcgctacatcgcctggttc
gagccggagcatcatgtggtgcgcgccaatgcccgcttctttcttgatcgcttcgccagt
cagcgctggtcgatcctcacgcccgatctctgcctccactgggatggcgagtcgctggtc
gaggcaccgggggccgacccgcgcgatgcgccgcgggaggatgccacggaggatctctgg
cagcgttattatgcgtcgatcttcaatcccgcgcgcctgaaggtcggcatgatggtcaag
gagatgccgcgccgctactggaagaatttgcccgaggcgcaattgatcccgcagctcatc
gccggtgcgcaggcgcgcgaggcggccatggtggcgcagggcgccgatccctttccggcc
gcgccgcctgggacgctggaagagatcgcgcagggaatcgccgcctgccgccgctgcccc
atcggctgcaatggcacgcgcgccgttccgggcgaggggccggcgcaggcccggctcctg
atcgtcggcgagcagcccggggatagcgaggagcgcgccggccggccctttgtcgggccg
gccgggcagcttctcgatcgtcatctccaacaggcggggctggatcgcgcatcgatccgg
ctgaccaacgcggtgaagcatttcaggttcgagccgcgcggcaagcggcgcattcaccag
acgcccacggccgggcagatcgatcgctgccgctggtggctggaggccgagcggcggctc
gtgaagccggacatggtcctggcgctgggcgccagtgcgggacgggccctgctgggccgc
gcgccgaggctggccgacgagcgcggcacggcgatgcgtctggcggacggcgccggcctc
tggctgacggtcgatcccagctatctgctccggctcgacggcgccgcgcgggaccgggaa
gaagcgcgctttcaggatgacctggcccgattgcgcatcatgctggaagagccggccgcc
acgccctga
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