Streptococcus pseudopneumoniae: SPPN_04925
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Entry
SPPN_04925 CDS
T01590
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
std
Streptococcus pseudopneumoniae
Pathway
std03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
std00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPPN_04925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
std03019
]
SPPN_04925
03016 Transfer RNA biogenesis [BR:
std03016
]
SPPN_04925
Enzymes [BR:
std01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPPN_04925
Messenger RNA biogenesis [BR:
std03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPPN_04925
Transfer RNA biogenesis [BR:
std03016
]
Prokaryotic type
tRNA degradation factors
SPPN_04925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
CSD
Motif
Other DBs
NCBI-ProteinID:
AEL10421
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All DBs
Position
932021..934375
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AA seq
784 aa
AA seq
DB search
MKDRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLSLMERKHQIRFEEDGSLTLEI
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSEFPEAVVKEAESVPD
APSKKDTEGRLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLD
TNEAKILVDKQGKPVDIVLRQRGVAERMIESFMLMANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQEARYS
EYNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIVEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGTTFRVGQQIRIRVERADKMTGEIDFSYIPSEFDVIEKGLKQSNR
SDRGRGSNRRSDKKEDKRTSGRSNDKRKHSQKDKKKKGKKHFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagaataaaagaatatttacaagataagggaaaggtgactgttaatgatttg
gctcaggctttgggaaaagatagttccaaggattttcgtgagttgattaaaaccttgtcc
ctaatggaaagaaagcatcagatacgctttgaagaagatggtagtctgacattagaaatt
aagaaaaaacatgagattaccctcaaggggatttttcatgcccataaaaatggctttggc
tttgttagtctggaaggcgaggaggacgacctttttgtaggaaaaaacgatgtcaactat
gctattgatggtgataccgttgaggtagtgattaagaaagtcgctgaccgcaataaggga
acagcagcagaagcaaaaattattgatatcttagaacacagtttgacaactgttgtaggt
caaatcgttctggatcaggaaaaacctaagtatgcaggctatatccgttcgaaaaatcag
aaaatcagccaacccatctatgttaagaaaccagcccttaaactggagggaacagaagtt
ctcaaggtctttatcgataaatacccaagcaagaaacatgatttctttgtcgcgagtgtt
ctcgatgtggtgggacactcaacagatgtcggaattgatgttcttgaggtcttggaatca
atggacattgtatccgagtttccagaagctgttgtcaaggaagcagaaagtgtgcctgat
gctccgtctaaaaaggatacggaaggtcgtctggatctaagagatgagattatctttacc
atcgatggtgctgacgccaaggacttggacgatgcggtgcatatcaaggccttgaaaaat
ggaaatctggagcttggtgttcacatcgcagatgtttcctactatgtgaccgaggggtct
gcccttgataaggaagctcttaaccgcgcaacttctgtctatgtgactgaccgtgtggtt
ccaatgcttccagaacgactatcaaatggcatctgttctctcaatccccaagttgaccgt
ctgacccagtctgccattatggagattgataaacatggtcgtgtggtcaactataccatt
acacaaacagttatcaagaccagttttcgtatgacctatagcgatgtcaatgatatccta
gcaagcgacgaggaaaagagacaagagtatcagaaaattgttcctagtatcgaacttatg
gccaaacttcacgaaaggctagaaaacatgcgtgtgaaacgtggagccctcaatttagat
accaatgaagccaagattttagtggataaacaaggtaagcctgttgatatcgttcttcgt
cagcgtggtgttgccgagcggatgattgagtcttttatgttgatggccaatgaaacagtt
gccgagcatttcagcaagctggacctaccttttatctatcgaattcacgaggagcctaag
gctgaaaaggttcagaagtttattgattatgcttcgagtttcggtattcgaatctatggg
actgctagtgaaatgagtcaagaggcacttcaagatattatgcgagcagttgagggggaa
ccttatgcagatgtattgtccatgatgcttcttcgctccatgcaggaggctcgttattcg
gagtataatcacgggcattatggacttgcggctgactattatactcactttactagtccg
attcgtcgttatccagaccttcttgttcaccgtatgattcgtgattacggccgttctaag
gaaatagtagagcattttgagcaagtgattccagagattgcgacccagtcttccaaccgt
gaacgtcgtgccattgaggctgagcgtgaagtcgaagccatgaaaaaggctgagtatatg
gaagaatacgtgggcgaagagtacgatgcggttgtgtccagcattgtcaagtttggtctc
tttgttgaattgccaaacacagttgaaggcttgattcacatcacaaatctacctgaattt
tatcatttcaatgagcgtgatttgactcttcgtggggagaaatcaggaacaactttccgt
gtaggtcagcaaatccgtatccgagttgaaagagccgacaagatgacgggtgaaattgac
ttctcttacatcccaagtgagtttgatgtgattgaaaaaggcttaaaacagtctaatcgt
agtgacagagggcgtggttcaaatcgtcgttcagataagaaggaagataagagaacatca
ggacgctcaaatgataagcgcaagcattcacaaaaagacaagaagaaaaaaggaaagaaa
catttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
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