KEGG   Stenotrophomonas sp. WZN-1: CCR98_00115Help
Entry
CCR98_00115       CDS       T04963                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sten  Stenotrophomonas sp. WZN-1
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sten00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    CCR98_00115 (ligD)
Enzymes [BR:sten01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CCR98_00115 (ligD)
DNA repair and recombination proteins [BR:sten03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CCR98_00115 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
24592..27084
Genome map
AA seq 830 aa AA seqDB search
MSLHQYRRKRRLGGGTGQTPEPDDTPARGDLQRRPIFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRAGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVVVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRGDEEARDAEADDLLGAPVPK
RASAVMKRTVGKTGRAAPAARTSPRKADARWHARALKLDGARDAPYPHEFKPQLTDHRDS
APDGAHWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVRALPVRDARLDG
ELVVLDPEGRSDFAALQRVIDGSSKQSLRYIVFDLPGVANADISRAPLLQRKALLKDLIG
PMPGILAFSEHVIDHGPQVFDASGEAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFV
IVGYTAPRGSRVGFGSLLLATPDKEGLRYVGRVGTGFDGENLRALLKALQPLAVKTPVLQ
LPAHVPFRAASVCWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKRKEDLGMSKTTAVA
EPGGEVQITHPERVVFPRQKLSKGDVADYYRQMARWILPEIAGRPLSLLRCPDGVGKACF
FQKHHGPGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADPEHP
DRLVFDLDPGDGVSWAQVKAGARDVRDRLQQVGLESFVRLSGGKGVHVVVPLQPKADWEQ
AKAFCEAFAQAMALEQPDRYVATMSKAKRDGVIFIDWLRNTRGATSVCSWSLRARDSAGV
AVPLRWEELARVSAADAFPMGKALARAKRLKGDPWQGIARLKQTLPSLKR
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atgtcgctgcaccagtaccggcgcaagcgccgacttggcggtggcaccgggcagacgccg
gagcccgacgacacgcccgcacgcggagatctgcagcggcggccgatctttgtcatccag
ctgcatcacgcaagctcgcgtcactacgacttccgcttggagatggacggtgtactgaag
agctgggcggtgccgaaggggccttcgctgcgcgccggcgagaagcggctggccgtggaa
gtggaagaccatccgctgtcctacgccggtttcgaaggcgacattcctgaaggccactat
ggtgctggccacgtggttgtcttcgatcacggcacctgggcctgtgaaggcgatccactg
caggcgctggccgccggaaagatcgatttcgtgctgcacgggcagcgcctggccggtggc
tggaagctggtgcgcacggcaatgaaagggcgtcaggtgcagtggctgctgatcaagcgc
ggtgacgaggaagcgcgcgatgccgaagcagacgatctgctgggcgcgcccgtgcccaag
cgcgcatccgcagtgatgaagcgcactgtggggaagacagggcgtgctgcaccagccgca
cgcacgtctccccgcaaggccgatgcacgctggcatgcgcgcgcgctgaaactggacggc
gcgcgtgatgcgccctacccgcatgaattcaaaccgcaattgaccgatcatcgcgacagt
gcgccggacggcgcgcactggctgcacgagatcaagtgggacggctaccgcctgctggcc
gatctgcacgacggcgaggtgaagctgcgctcccgcaatggcctggattggactgatgat
tttcccgaggtggtacaggccgtgcgggcgctgccggtgcgtgatgcgcgcctggacggt
gagctggtggtgctcgacccggaagggcgcagcgatttcgcggcgctgcagcgcgtgatc
gatggaagctcgaagcaatcgctgcgctacatcgtgttcgatcttccgggtgtggccaac
gcggacatcagtcgtgcgccattgctgcaacgcaaagcgctgctgaaggatctcatcgga
cccatgcccggcatcctggccttcagcgaacatgtgatcgaccacggcccgcaggtgttc
gacgccagtggcgaggcgggattcgaagggatcgtcagcaagcaggtggacgcgccctat
gtgaacacacgcgcacgcagctgggtgaaggtgaagcacgaagacaccgacgagttcgtg
attgtcggctacacggcccccaggggctcgcgggtgggtttcggatcattgttgctggca
acgccggacaaggagggcctgcgctatgtgggccgcgtcggtactggcttcgacggcgag
aacctgcgcgcgctgctcaaggcattgcagccactggcagtaaagacgcccgtgctgcag
cttccggcgcatgtgccgttccgcgccgccagcgtgtgctgggtgaagccggtgacggtg
gcggaagtggcattccgtggctggggcaaggaaggcctgctgcgccaggccagcttcaag
cggctgcgcagcgacaagcggaaggaggatctgggaatgagcaaaacaacagcagttgct
gaacccgggggcgaggtccagatcactcatccggaacgtgtggtgtttcccaggcagaag
ctcagcaagggcgatgtggccgactactaccggcagatggcgcgctggatcctgcccgaa
attgccggacggccgctgtcactgctgcgttgccccgatggcgtgggcaaggcctgtttc
ttccagaagcaccatggcccgggcctgggtgatgcggtgcatgcggtgccgctgcagcag
aagagcggccgcgaggactacgtctatatcgacgatgcgcggggcctgctgcagctggtg
cagatgaacacgctggagttgcatccctggggcgcgaccgtggccgaccccgagcatccg
gatcgactggtgttcgatctggaccctggtgacggcgtcagctgggcacaggtgaaagcg
ggcgcacgcgatgtgcgtgaccgcctgcagcaggtgggtctggagagcttcgtgcgactg
tctggcggcaagggggtgcacgtggtggtgccgctgcaacccaaggccgactgggaacag
gccaaggcgttctgcgaggcttttgcgcaggcaatggcgctggagcagcctgatcgctac
gtggcgacgatgagcaaggccaagcgtgatggagtgatcttcatcgactggctgcgcaac
acccgaggggccaccagcgtgtgctcgtggtcactgcgcgcgcgtgattccgccggtgtg
gcagtaccgctgcgctgggaagaactggcgcgggtgagcgcggccgacgcgtttccgatg
ggcaaggcgctggcgagggcgaagcggctgaagggagacccatggcagggcatcgcacgg
ttgaagcagacgctgccgtcgctgaagcggtag

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