Sulfurovum sp. NBC37-1: SUN_0431
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Entry
SUN_0431 CDS
T00572
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sun
Sulfurovum sp. NBC37-1
Pathway
sun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SUN_0431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sun03019
]
SUN_0431
03016 Transfer RNA biogenesis [BR:
sun03016
]
SUN_0431
Enzymes [BR:
sun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SUN_0431
Messenger RNA biogenesis [BR:
sun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SUN_0431
Transfer RNA biogenesis [BR:
sun03016
]
Prokaryotic type
tRNA degradation factors
SUN_0431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
BAF71391
UniProt:
A6Q7D2
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All DBs
Position
complement(435894..437861)
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AA seq
655 aa
AA seq
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MSAFAVQLTNGCLPSDIELEDKNAFEELQRIGAIEEVDGLWKLGSLYRAGELYIGKDGRG
YVESQFKEQKDLLVEPDHLGDAKNGDTVVVKRIIARRGRASGKVVMVITKAHLFTIAYTH
RDEAGNFMVLNIKTGEPTHAVMEGMDLKAFKLGTVMKVDADDDKVLQVFGHLDDPRVDEK
ISLALYNRHDEFPPQCVEEALQIESEVTKEEHTDRIDLTHLDFCTIDPVTAKDFDDAVYF
DLETYTLYVAIADVSHYVPYFTEIDKEAKKRGFTTYLPHKSFPMLPRELSENICSLKPKV
DRLAFVAKITLDQNSLKPLKEEFFEAIIHSRHRFNYEPVDRIIDTNGKEATGKVKEILHY
LLPLYRITQRLRKERLKHGFDFRSEEIKLTLNEEQLLVSTQIETGTPSHSLIEECMLLAN
QASAKRFKGDGDSIFRIHELPQLQKIEALLTELAAIGLYVEEYEDSPSLIRAIQKEAGKM
GLSAEVDAMIIKSLRQASYSSHNVGHFGLGFSHYSHFTSPIRRYADLILHRLIKTQLTNN
EEEAEYLLRNIEPLCVRVSDLEREATKAEWDFRDRKFARWAKTQIGAFFEAEVIEAGESA
KARLFGDIQGVIVHLRGDNIMLFDKIRIMITEVNIPQAIIMAELVNKLSKEETEL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttttgccgtacaactcaccaatggatgtctcccctcggatatcgagcttgaa
gacaagaatgcttttgaggaactgcagcgtatcggtgcgattgaagaagtcgacggacta
tggaaactgggttctctctaccgggcaggagaactctacatcggcaaagacggaagaggc
tatgtggaatcgcagttcaaagagcagaaagacctgctggtcgaacccgatcatctcgga
gatgcaaagaacggcgatacggtagtggtcaaacgtatcattgcaagacgcggacgcgcc
agcgggaaagtggtcatggtcattaccaaagcccatctttttaccattgcctatacgcac
agggatgaagcaggcaattttatggtactcaatattaagaccggtgaaccgacccatgcc
gtcatggaagggatggacctcaaagccttcaagctgggtactgtgatgaaggtggatgcg
gacgatgacaaggtcctccaagtcttcgggcatctcgatgaccccagggtggatgagaag
atctcgcttgcactctacaatcgtcacgacgaattcccaccgcaatgcgtggaagaggcg
ctacagatcgaatcggaagtgaccaaagaggagcataccgaccgtatcgaccttacccat
cttgacttttgcaccatcgacccggtcacggcaaaagattttgacgatgccgtctatttt
gacctcgaaacatatacgctttatgtggccatcgccgatgtcagccattatgtcccctac
ttcactgagatagacaaggaggcgaagaaacgtggattcacgacttatctgccgcacaaa
tccttccctatgcttccgcgtgaactgagtgaaaacatctgttctctcaagcccaaagtg
gacaggcttgccttcgttgcgaagatcacactggaccaaaactctctcaaaccgctcaaa
gaagaattcttcgaagccattatccactccagacaccgcttcaactatgaaccggtcgac
aggatcatcgacacaaacggcaaagaagcgacaggaaaggtcaaagaaatcctgcactat
cttcttcccctctacaggatcacccaaagactgcgcaaagagcgcctcaaacacggcttc
gatttcagaagcgaagagatcaagctgaccctcaacgaagagcagctcctcgtcagtacg
cagatagagacaggtaccccttcacattctctcatagaagagtgtatgctgctggccaac
caggcttccgccaaacgatttaaaggggacggggacagcattttccgtatccatgaactg
ccgcagcttcaaaagatagaagcgctgctcaccgaactggcagccatcgggctctatgtt
gaagagtatgaggattccccttcgctcatcagggccatacagaaagaggctgggaagatg
ggactctccgccgaagtggatgcaatgatcatcaaatcgctcagacaggcaagttattca
tctcataacgtcggccacttcggtcttggcttcagccattacagccacttcacctcaccc
atacgacgctacgccgacctcatactgcaccgtctcatcaaaacacagctcactaacaac
gaggaagaggcagaatatctcctgcgcaacatcgaaccactctgcgtgagggtatcggac
ctggagagggaagcgaccaaagccgaatgggatttcagagaccgcaaatttgccagatgg
gccaaaacgcagatcggggccttcttcgaagccgaggtcattgaagcgggagagagtgcc
aaagccagactctttggagatattcagggtgttatcgtacatctcagaggcgacaacatc
atgctcttcgacaaaatacgcatcatgatcacggaagtgaacatccctcaagccatcatt
atggcggaactggtcaataagctgagcaaagaggagacggagctgtaa
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