Stigmatella aurantiaca: STAUR_5012
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Entry
STAUR_5012 CDS
T01425
Name
(GenBank) RNA polymerase Rpb1
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STAUR_5012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sur03021
]
STAUR_5012
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_5012
Enzymes [BR:
sur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STAUR_5012
Transcription machinery [BR:
sur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STAUR_5012
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STAUR_5012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ADO72790
UniProt:
E3FGT1
LinkDB
All DBs
Position
complement(6187269..6191486)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFNAIRIALASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKDLEKVLYCESYIVLDPKATPLLKGELLSEEKMHRLFQEHGEDSFTAG
MGGEAVREMMKSIDIEKLSEDLRRDMRETNSEAKRKKYAKRLKVAEAFRVSGNRPEWMML
DVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEDVIREH
PVLLNRAPTLHRLGMQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPAHGKPIIVPTQDMVLGIYYMTRAREFAHGEGRVFASPEEVRAAYDH
GEVHLQAKVVCRINGKRKETTVGRVLLWDIVPRKVGFDAINKVLDKKSLGSLIDLCYRLT
GEKETVLLADRIRSLGYTNATRAGISIALKDMVIPAKKQEFLDYANKEVAEIENQYLEGL
ITDGERYNKVIDIWAEITEKVASEMMQQISQEEASGEGKEGKRETRKQPSFNPIYIMADS
GARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLSVLQYFISTHGARKGLADTAL
KTANSGYLTRRLVDVAQDAIINEYDCGTMDGLFIGSLVEGGEIIEPLGERILGRVALDDI
LDPVTGEVLVRANEEIDEDRVRRIENSGLDKVKIRSVLTCQAKRGICVECYGRDLARGRK
VSIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTATRRAEQSSLENRYSGTVKFAGLITVQK
TDGTLVAMNRNGELVVVDDSGRERERYQVIYGARILVKEGQRLEAGTLLAEWDPFAIPLL
TEVGGVVRYEDIIEGVTMSEALDEVTGLSRKTVIESKDPEARPRITIRDANGNVKELPSS
RNPASYFLPQGSIITVNDGDEIHPGEVIAKVPRETTKTKDITGGLPRVAELFEARKPKDA
AAIAEIDGVVSFGKDTKGKRKLIITPEVNNEARTDLAKEYLISKGKNISVHSGDRVKAGE
ALMDGSANPHDILKVLGEKELARYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVTE
VGDTNFLVDEQVEKWVFEEENEKVMSEGKRPAVGEPLLLGITKASLSTESFISASSFQET
TKVLTEAAINGKVDYLRGLKENVIMGRLIPAGTGLPNYRHLDIEVESPTDEVNEMEAALA
ATHGDSSSMQSLSSRSEGTQTSGAA
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacattttcaacttcttcgagaagccgaaggacccgctgtcgtttaacgccatt
cgcatcgcgctggcgtcgccggacaagatccggcagtggtctcacggcgaggtgaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgggacggtctcttctgcgcccgc
atcttcgggccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgtgagaagtgcggcgtggaggtcatccagtccaaggtgcgccgtgag
cgcctgggccacatcaccttggccacgcccgtggcccacatctggttcctcaagtcgctg
ccgagccgcatcggcaacctgctcgacatcaccctgaaggatctggagaaggtgctctat
tgcgagagctacatcgtcctggatcccaaggcgacgccgctgctcaagggtgagctgctc
tccgaggagaagatgcaccggctcttccaggagcacggtgaggactccttcaccgccggc
atgggcggcgaggccgtccgcgagatgatgaagtccatcgacatcgagaagctgtcggag
gacctccgccgcgacatgcgggagaccaacagcgaggccaagcggaagaagtacgccaag
cgcctgaaggtggccgaggccttccgcgtctcgggcaaccgccccgagtggatgatgctg
gacgtcatccccgtcatcccgcccgacctgcgtccgctcgtccccctggacggtggccgc
ttcgcgacgtccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctc
aagcggctccaggagctgaacgcgccggacatcatcatccgcaacgagaagcggatgctg
caggaggccgtggacgcgctgttcgacaacggccgccgtggcaagaccatcaccggcccg
aacaagcggccgctgaagtcgctgtccgacatgctcaagggcaagcagggccggttccgc
cagaacctgctcggcaagcgcgtggactactcgggccgctccgtcatcgtcgtgggcccg
gagctcaagctccaccagtgcggcctgccgaagatcatggcgctcgagctcttcaagccg
ttcatctacaacaagctcgaagagaagggctacgtcaccaccatcaagagcgccaagaag
atggtggagaaggagcgtcccgaggtgtgggacatcctcgaggacgtgatccgcgagcac
ccggtgctcctcaaccgcgcccccacgctgcaccgcctcggcatgcaggccttcgagccg
gtcctcatcgagggcaaggccatccagctgcacccgctggtgtgcgccgccttcaacgcg
gacttcgacggcgaccagatggccgtgcacgtgccgctctccatcgaggctcagatggag
gcgcgcgtgctgatgatgtccaccaacaacatcctcagccccgcacacggcaagcccatc
atcgtccccacgcaggacatggtgctcggcatctactacatgacgcgcgcccgtgagttt
gcccacggcgagggccgcgtgttcgcctcgcccgaggaagtgcgcgccgcgtacgatcac
ggcgaggtgcacctccaggcgaaggtcgtctgccgcatcaacggcaagcgcaaggagacc
acggtgggccgcgtcctgctgtgggacatcgtcccgcgcaaggtcggcttcgacgccatc
aacaaggtgctcgacaagaagtcgctcggctcgctcatcgacctctgctaccgcctcacc
ggcgagaaggagacggtgctcttggccgaccgcatccgcagcctcggctacaccaacgcg
acccgcgccggcatctccatcgcgctcaaggacatggtcattcctgccaagaagcaggag
ttcctggactacgcgaacaaggaagtggcggagatcgagaaccagtacctcgagggcctc
atcaccgacggtgagcgctacaacaaggtcatcgatatctgggcggagatcaccgagaag
gtcgccagcgagatgatgcagcagatctcgcaagaggaagcctcgggagagggcaaggag
ggcaagcgcgagacgcgcaagcagccgtccttcaaccccatctacatcatggccgactcc
ggtgcccgtggctctgcccagcagatccgccagctggccggtatgcgtggcctcatggcc
aagccctcgggtgaaatcatcgagacgcccatcacggcgaacttccgtgaaggcctctcg
gtgctccagtacttcatctccacccacggtgcccgcaagggtctggccgacacggcgctc
aagaccgccaactccggttacctcacccgccgtctcgtggacgtggcgcaggacgccatc
atcaacgagtacgactgcggcaccatggacggtctgttcatcggttccctggtcgagggc
ggcgagatcatcgagccgctcggcgagcgcatcctgggccgcgtggccttggacgacatc
ctcgatcccgtcacgggcgaggtgctggtgcgcgccaacgaggagatcgacgaggaccgc
gtccgccgcatcgagaacagcggtctggacaaggtgaagatccgctcggtgctcacctgc
caggccaagcgcggcatctgcgtggagtgctacggccgtgacctggcccgtggccgcaag
gtgtccatcggcgaggccgtgggcgtcatcgcggcgcagtccatcggcgagccgggtacc
cagctcacgatgcgcacgttccacatcggtggtacggcgacgcggcgcgcggagcagtcc
agcctcgagaaccgctacagcggcacggtgaagttcgcgggcctcatcacggtgcagaag
acggacggcaccctggtggccatgaaccgcaacggcgagctcgtcgtggtggacgacagc
ggccgcgagcgcgagcgctaccaggtcatctacggcgcccgtatcctcgtgaaggagggc
cagcgcctcgaggctggcacgctcctggccgagtgggatccgttcgcgattccgctgctc
accgaggtgggcggtgtcgtgcgctacgaggacatcatcgaaggcgtcacgatgagcgag
gccctcgacgaggtgaccggcctcagccgcaagacggtcatcgagtcgaaggatcccgag
gcccgtccgcgcatcaccatccgtgatgcgaacggcaacgtgaaggagctgcccagctcc
cgcaacccggcgagctacttcctgccccagggctcgatcatcaccgtcaacgatggtgac
gagatccacccgggcgaagtcatcgccaaggtgccgcgcgagacgacgaagaccaaggac
atcacgggcggtctgccccgcgtggccgagctcttcgaggcgcgcaagccgaaggacgcg
gcggcgatcgcggagatcgacggcgtggtgtcgttcggcaaggacaccaagggcaagcgc
aagctcatcatcacccccgaggtgaacaacgaggcgcgcacggacctggccaaggagtac
ctgatctccaagggcaagaacatcagcgtgcactcgggggaccgcgtgaaggcgggcgag
gccctgatggacggctccgccaacccgcacgacatcctcaaggtgctcggcgagaaggaa
ctggcgcgctacctggtggacgaggtgcaggaggtctaccgcctccagggcgtgaagatt
aacgacaagcacatcgagacgatcgtccggcagatgctgcgccgggtgcgcgtcaccgag
gtgggcgacaccaacttcctggtcgacgagcaggtcgagaagtgggtgttcgaggaggag
aacgagaaggtcatgtccgagggcaagcgccccgcggtgggcgagccgttgctgctcggc
atcaccaaggcctcgctctccaccgagtcgttcatctcggcgtcctccttccaggagacc
accaaggtgctcaccgaggccgccatcaacggcaaggtcgactacctgcgtggcctcaag
gagaacgtcatcatgggccgcctcatccccgcgggcacgggtctgccgaactaccgccac
ctcgacatcgaagtggagagcccgaccgacgaggtcaacgagatggaggccgccctggcc
gccacccacggagactcgtcctcgatgcagtccctctcgtcgcgctccgaggggacgcag
acctcaggcgctgcctag
DBGET
integrated database retrieval system