KEGG   Candidatus Solibacter usitatus: Acid_7844Help
Entry
Acid_7844         CDS       T00412                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sus  Candidatus Solibacter usitatus
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sus00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Acid_7844
Enzymes [BR:sus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Acid_7844
DNA repair and recombination proteins [BR:sus03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Acid_7844
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
9839542..9841434
Genome map
AA seq 630 aa AA seqDB search
MPAEMPASIEPMKATIAERVPRGDEWLFEIKWDGVRAVAFLDNEEVRLQARSGLRCERQY
PELAVLPHHVAAARAILDGEIAVLDAKGVSQFHLIQPRIANSDPNTIAHLVRSTPVVYFA
FDLLYLDGYDLRNVDLAKRRELLERVLTPGAQVRVSDVFPGAGEALLEAARENGLEGIIA
KHPRSCYESRRSREWLKIKIVTEQEFVIGGFTEPQGDRQYFGALVLGVQKAGALRWVGNV
GTGFDQKLLASLYARLEPLITTKCPFVERPKPDRGMTWVRPELVCQVKYGNWTPDDRLRA
PVFIGLRNDKPVVEVEKETTGELLPKSKEATLPIDGRTLKFTNLSKLYYPDDGVSKRDVI
NYYDSVADLILPHLRDRPLSLKRYPNGIKEDFFFQKNTPETYPAWMRTELIDSDHAGAIN
YVFADDRASLLYLVNLGCIDQNPWISRSGSLDNPDFVLIDLDPQECAYDLIVEAAVMVKE
ILDRIGLKGYPKTTGGDGMHVYIPVEAVYSYEETRIFAELIARLVTQRKPQMYTTPRSVS
KRQKNRVYFDYLQNGKSKTIAAPYVLRAYPGAPVATPLEWSEVKPGLDPKQFHIGNARER
FRKKGDLFRGVLDAPQNLYDALGKLEKLFR
NT seq 1893 nt NT seq  +upstreamnt  +downstreamnt
atgcctgcggaaatgccggcgtcgatcgagccgatgaaggcgacgattgccgagcgcgtg
ccgcgtggggacgagtggctgttcgagattaaatgggatggggtgcgagcggtcgctttt
ttggataacgaagaagtgcggctgcaggcgcggagcggattgcgctgcgagcggcaatac
ccggagctggcggtgctgccgcatcacgtggccgcggcgcgcgcgattctggacggcgaa
atcgcggtgctggatgccaaaggcgtttcccagtttcatttgattcagccgcgcatcgcg
aatagcgatccgaatacgattgcccatctggtgcgctccacgccggtggtgtatttcgcg
ttcgacctgctctacctggatggctacgatctgcgcaacgtggacctggcgaagcgtcgc
gaactgttggagcgagtgctgacgccgggagcgcaagtacgagtctccgatgtgtttccc
ggcgcgggagaggccctgctggaagcggcacgggagaacgggctcgagggcatcatcgcc
aagcatccgcggagctgctacgaatccaggcgaagccgcgagtggctaaagatcaagatt
gtcaccgagcaggaattcgtgatcggcgggttcacggaaccccaaggcgaccggcagtac
ttcggcgcgcttgtgctgggggtgcaaaaggcgggcgccctgcgctgggtcggcaatgtg
ggcacgggcttcgatcaaaagctgctggcgagcctatacgcgcggctcgagccactgatc
accactaagtgcccgttcgtcgagcggcccaagccggatcgagggatgacgtgggtaagg
ccggagctggtatgccaggtgaaatacggcaactggaccccggacgaccggctgcgcgca
ccggtcttcatcgggctgcgcaacgacaagcccgtggtggaggtggagaaagagacgacg
ggtgaactgcttccgaagagcaaggaggcgacgctaccgatcgacgggcgcacgctcaag
ttcacgaatctctctaagctgtattaccccgacgatggggtcagcaagcgggacgtgatc
aactactacgactcggtggcggatttgattctgccgcatctgagagaccggccgctttct
ctgaagcgatatccgaacggcatcaaggaggattttttcttccaaaagaatacgccggag
acgtatcctgcgtggatgcggacggagctgatcgacagcgaccacgcgggggcgatcaac
tacgtgttcgcggatgaccgggcaagcctgctgtacctggtgaatctgggatgcatcgac
cagaatccgtggatcagccggtcgggatcgctggacaatccggatttcgttctaatcgac
ctggatccgcaagagtgcgcatacgatttgattgtggaagcggcggtgatggtgaaggaa
attctagaccggatcgggctgaagggttatccgaagacaacaggcggggacgggatgcac
gtgtacattccggtggaagcggtgtacagctatgaggagacgcggatcttcgcggaactg
atcgcgcggctggtgacgcagcggaagccgcagatgtacacaacgccgcgctcggtgagc
aagcgacagaagaaccgggtgtatttcgattacttgcagaacgggaaatcgaagacgatc
gcggcgccgtatgtgctgcgggcgtaccctggggccccggtggcaactccgctggagtgg
agcgaggttaagcccgggctggacccgaagcagtttcacatcgggaatgcacgggagcgg
ttccggaagaagggcgatctgttccgtggagtgttggatgcgccgcagaatctttacgat
gcgctgggcaagctggagaagcttttccggtaa

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