Saccharomonospora viridis: Svir_08690
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Entry
Svir_08690 CDS
T00980
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03030
DNA replication
svi03410
Base excision repair
svi03420
Nucleotide excision repair
svi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Svir_08690
03410 Base excision repair
Svir_08690
03420 Nucleotide excision repair
Svir_08690
03430 Mismatch repair
Svir_08690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svi03032
]
Svir_08690
03400 DNA repair and recombination proteins [BR:
svi03400
]
Svir_08690
Enzymes [BR:
svi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Svir_08690
DNA replication proteins [BR:
svi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Svir_08690
DNA repair and recombination proteins [BR:
svi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Svir_08690
NER (nucleotide excision repair)
GGR (global genome repair) factors
Svir_08690
MMR (mismatch excision repair)
DNA ligase
Svir_08690
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Svir_08690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ACU95929
UniProt:
C7MXC0
LinkDB
All DBs
Position
891173..893368
Genome browser
AA seq
731 aa
AA seq
DB search
MGLTRLLIVSSEDLTASEELASVAESDPEAARTTPVEGIQDVPAEVRERHSALVEEIRGH
QFRYYVLDAPTISDAEFDQLMRDLERLEAEHPALVSPDSPTQTVGGTFSTEFRAHDHLER
MLSLDNVFDLDELQAWIDRVEREVGGSTRYLCELKVDGLAVNLVYENGRLVRGLTRGDGR
TGEDVTLNVRTVQDVPERLTATDRFPVPDVVEVRGEVYFRVEEFADLNAALVKAGKAPFA
NPRNAAAGSLRQKDPKVTRSRPLRLVCHGLGKRVGFEPTRQSESYEALAAWGLPVSPYSK
VIDSTEELIEYIRYWNEHRYDAAYEIDGVVVKVDDVSLQRRLGTTSRAPRWAVAYKYPPE
EANTTLLDIRVNVGRTGRVTPYAVMEPVKVAGSTVSMATLHNAEEVKRKGVLIGDRVVIR
KAGDVIPEVLGPIVDLRTGTEREFVMPTHCPECGTQLAYEKEGDVDIRCPNARSCPAQLR
ERLFHLAGRGAFDIEVLGYEAAGALLRSGVIADEGDVFDLTEEDLKRVDLFVTKSGQLSA
NGRRLLDNLAAAKDRPLWKVLVGLSIRHVGPTAAQALAREFGSIDAIDAASEERLAEVDG
VGPTIAKAVREWFAVDWHREVVEKWRRAGVRMEAERDTSVPRNLEGLSIVVTGTLREFSR
DEAKEAIMARGGKAAGSVSKKTAFVVVGDAPGSKYDKAVQLKIPVLDEDGFRVLLDQGPE
AAMKVAEQPAD
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggggctgactaggctgctcatcgtgagcagcgaggatctgacggcgagcgaagagttg
gcctcggtcgccgaaagcgacccggaggcggcgaggaccacacccgtcgagggcatccag
gacgtccccgcggaggtgcgggaacggcacagcgccctggtcgaggagatccgcggacac
cagttccgctactacgtgctggacgcgcccacgatctccgacgccgagttcgaccagttg
atgcgtgacctggagcggctggaggccgaacacccggcgctggtctcacccgactcaccc
actcagaccgtcggcggcacgttctccacggagttccgcgcccacgaccatctggagcgc
atgctcagcctcgacaacgtcttcgacctcgacgagttgcaggcgtggatcgacagggtc
gaacgggaggtcggcggcagcacgcggtacctgtgcgagctgaaggtcgacgggctcgcg
gtcaacctcgtgtacgagaacggcaggctcgtccgcgggctcacccgcggcgacgggcgc
acgggtgaggacgtcacgctcaacgtgcgcacggtgcaggacgtgcccgagcgactgacg
gcgaccgaccgtttccccgtgccggacgtggtcgaggtgcgcggtgaggtgtacttccgg
gtggaggagttcgccgacctcaacgccgcgctcgtgaaggcgggcaaagcgccgttcgcc
aatccgcgcaacgccgccgccggatcactgcggcagaaggatcccaaggtcacgcgcagc
aggccgttgcgactggtctgccacgggctcggcaaacgggtcggtttcgaacccacccga
cagtccgagtcgtacgaggcgctcgcggcgtgggggctgcccgtctcgccgtacagcaag
gtgatcgactccaccgaggagttgatcgagtacatccgctactggaatgagcaccggtac
gacgcggcctacgagatcgacggcgtcgtcgtcaaggtcgacgacgtgtcgttgcaacgc
agactcggcaccacgtcccgggcgccccggtgggcggtcgcctacaagtaccccccggag
gaagccaacacgacgctgctcgacatccgcgtgaacgtgggtcgcaccggacgcgtcacg
ccgtacgcggtcatggaaccggtgaaggtcgccggttcgacggtgtcgatggccaccctg
cacaacgccgaggaggtcaagcgcaagggcgtgctcatcggcgaccgcgtggtgatccgc
aaggccggggacgtgatccccgaggtactcggccccatcgtggacctgcgcaccgggacc
gaacgcgaattcgtgatgcccacccactgcccggagtgcggtacgcagctggcgtacgag
aaggagggcgacgtcgacatccgttgcccgaacgcgcggtcgtgtcccgctcagttgcgg
gaacggttgttccacctcgccgggcgcggtgcgttcgacatcgaggtcctcggctacgag
gcggcgggtgccctgctgcggtccggtgtgatcgccgacgagggtgacgtgttcgacctc
accgaggaggatctcaagcgggtcgacctgttcgtcaccaagtcgggacagctgtccgcc
aacggacggcgcctgctggacaatctcgccgccgccaaggatcgtccgttgtggaaagtc
ctggtgggactgtcgatccggcacgtcggcccgacggccgcgcaggcgctcgcgcgggag
ttcggttccatcgacgcgatcgacgcggccagcgaggaacggctggccgaggtcgacggg
gtcggtcccaccatcgccaaggcggttcgcgaatggttcgcggtcgactggcaccgcgag
gtcgtggagaaatggcgccgcgcgggagtgcgcatggaggccgagcgcgacacgtcggtg
ccgcggaacctggaggggctttccatcgtggtcaccgggacgttgcgcgaattctcccgg
gacgaggccaaggaggccatcatggcgcgcggtggcaaagcggccggttcggtgtcgaag
aagaccgcgttcgtcgtggtgggcgatgcgcccggttcgaagtacgacaaggccgtgcag
ttgaagatccccgtcctcgacgaggacggtttccgagtactgctggaccaggggccggag
gccgcgatgaaggtggccgaacaacccgccgactga
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