Shewanella woodyi: Swoo_2641
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Entry
Swoo_2641 CDS
T00676
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
swd
Shewanella woodyi
Pathway
swd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Swoo_2641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_2641
Enzymes [BR:
swd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Swoo_2641
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Swoo_2641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ACA86918
UniProt:
B1KHN3
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All DBs
Position
3231271..3234843
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AA seq
1190 aa
AA seq
DB search
MLYLVQSNRMEALSAQLAQELQTPIPGMPLLMPEQILVQSPGMSTWLRLEIASKNKIAAA
LEFPLPSSFIWQLCHILLPDVPKENAFTKPSMTWKLMELLPELLDIEEFAPLKNYLNPNL
NSVSEQSSDNELDERPEEPLKLFQLCGQIADIFDQYLVYRPDWIAAWEASEPTLPPKGEK
LAPAQAWQPILWRALIKFNNERLNKSRYHRANLHQSLFDALDDPNTSLEGLPRRLFVFGI
SSMAPQTLDVLYHLAKRIDVIMLNLSPCQHYWGDIIDPRLRARMALEYANKHKLEAQWED
KLEVGNPLLANNGKMGRELLDLILELPEEHTNFNFECYQDPGVKNLLQGVQRDILELETR
GRSLGPDASLYLTLDGRRPLTIDDDSLTLRSCHSPLREIETLHDHLLEMLSREPVDPNDP
LLAKDIVIMLPDVAAYAPYIDAVFSAKQGAHYIPYAIADRGAAQESPLINSFLNILAINQ
SRFALTDILGILEVPAVLRRFELDDDDLMMIRQWLEQAGVRWGRDETSRAAQSLPAFDKN
SWAFGIKRLILGYAFSDDAPLYHDTLTVMGIEGQSAQALGKLLNFIEALDEYRLQLGQTC
EIEVRMAQLNQLLDDFYEVDDEERMQLQAIREAISKLKTELSDAGQITPLNTQVLQNWFN
STLSESRVGQRYLAGSVNFCTLMPMRSIPFKVVCLVGMNDGIYPRVQHPVGFDLVAQFGP
RKGDRSRRLDDRYLFLEAILSAREQLYISYIGHSERDNSERIPSMLVSELVEYCQLCYLP
ETFNKLDSSDAETVIKVIPAIEKAVHQQLLIEQPLQPFDERLYVSPASEIDGAIQLKQSY
SAQWCPTKAAGQSADGLERTPRFIDNGVTITQATELADSLDSQELEISALIRFFRNPAQY
FFNRTLKVDLGLNIQADDNDEPFNLNALERYKLQANLLDNAIEQKLEAPDETLLQRLKAG
GELPLAPFDDLLLGNYLHDIKPLIGRALYLQGENQKSLDIDLAFTAQDGLNEAITLVGRI
DDLCAKGLVNYRPGTANGRDLIRVYLRHLCICAMGENKQHTSYLLDIGHFHAFHGVTPEQ
ARAQLSLWLSLFQSGQLHPLMFMPRTALAYVEAEGEHADKLIEAQSQWIDEQSQLGEGFE
PHYQRLFSFPEDFTEVQFGLTAMTLLSPMLSLYHKDRLSELTAFVEGGAQ
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgctctatcttgttcaatcgaatcgaatggaagccctttctgctcaactggcgcaggag
ttacaaacccccattcccggtatgccattactgatgccggagcagatattggtacagagc
ccagggatgtccacttggttaaggcttgagatcgccagcaagaacaagatagctgccgca
ttggagtttcctctgccttcgagctttatttggcaactttgccacattttactgcccgat
gtacctaaggaaaacgccttcaccaaaccttcgatgacctggaaattgatggagttgcta
cccgagctgctcgatattgaagagtttgctccccttaaaaactatctcaatcccaaccta
aactcagtttctgagcagagctctgataatgagctagatgagaggcctgaagagccactc
aagctgtttcagctttgcggccagatagcggatatcttcgatcaatacttggtatatcgc
cccgactggatagctgcttgggaggccagcgagcccacattaccaccaaaaggtgaaaaa
ctcgcgccagctcaagcttggcaacctatattgtggcgcgcgcttatcaagtttaataac
gagcgattgaacaagagccgctaccacagagccaacctacaccaatctctgtttgatgcc
cttgatgatcccaacacctcccttgaaggcttaccaagacgcttattcgtatttgggatc
tcctccatggcgccacaaaccttagatgtgctctatcatctggccaagcgcatcgatgtg
atcatgttgaatttaagtccctgtcaacactactggggcgatattatcgatccacgcctg
cgtgctcgtatggcgctggagtacgccaataaacataaactcgaagcccagtgggaagat
aaacttgaagtgggtaatcccctgcttgccaataatggcaagatgggacgtgaactgctg
gatctgattttagaactccccgaggagcacaccaactttaacttcgaatgttatcaagac
ccaggggttaaaaacctacttcaaggtgtacagcgagacattcttgagcttgaaaccaga
ggcagaagcttaggccctgatgcctcactgtatctaaccctcgatggacgccgtccactg
acaatcgatgatgactcgctgacgttaagaagctgtcatagtccactacgagagattgaa
actctgcacgatcatctgctggagatgctctcacgggaacctgtcgatcccaatgatcct
ttgcttgccaaagatatcgttatcatgctgccagatgtagcagcctacgccccctatatc
gacgctgttttctcggccaaacagggcgctcactatatcccctacgccattgccgaccga
ggtgcagcgcaggaatcaccgctgatcaacagctttcttaatatcctcgccatcaaccag
agccgcttcgccctcactgacatcttagggattttagaggtacctgcagtactcaggcga
ttcgagctcgatgatgatgacttgatgatgatacgccagtggctagagcaagctggcgtg
cgttggggacgagatgaaaccagcagagcggcacagtctctgccagcattcgataaaaac
tcctgggcatttggcattaaacgtctcattttaggctacgcatttagcgatgatgcgccg
ctctatcacgacaccttaaccgttatggggatcgaggggcagtcggctcaagcattaggc
aagctactcaacttcatcgaagccttagatgaataccgtctacaacttggccaaacatgt
gaaattgaagtgcgtatggcccagctcaatcagctactggatgatttttatgaggtggat
gatgaagagcgcatgcagctacaagctatacgtgaagcgatcagcaaattaaaaactgag
ctgtctgatgcaggtcaaatcacgccgctaaacacgcaagtactgcaaaactggtttaac
agcaccctgagtgagtctcgtgtcggccaacgatatctggccggtagcgttaacttctgc
accttaatgccgatgcgatccattccttttaaggtggtgtgtttagttggcatgaacgat
ggtatctatcctagggttcagcacccagtaggctttgatctggtggcgcagtttggccca
cgcaaaggcgaccgttcacgccgtttagatgacagatacctatttttagaagcgatactc
tcagcccgtgagcaactttatatcagctatattggccacagtgagcgcgataactccgag
cggatcccctcaatgctggtctctgaactggttgagtattgccagctctgttacctgcca
gagacattcaacaaactcgactcgagtgatgctgaaaccgttatcaaggtgatccctgct
attgaaaaggcagttcaccagcagttgttaattgagcagccactgcaacctttcgatgag
cgcctttatgtaagtccggcctcagagattgacggcgcaattcaactcaaacagagctac
tcggcccagtggtgcccgaccaaagctgcaggccaatcagcagatggtctcgaacgtact
ccacggtttattgataatggggttactatcacccaagctacagaactggccgacagtcta
gatagccaggagctagagatctcggcgcttatccgttttttcagaaatccagcccaatac
tttttcaatcgcactcttaaggtcgacttggggcttaatattcaagctgacgataacgat
gagccctttaatctcaatgccttagagcgttataagctacaagctaatctactcgataac
gcgattgagcaaaaactggaagccccagacgaaacgctattacagcgactcaaagccggt
ggtgagctgccactcgccccctttgacgacctacttctgggcaattatctgcacgacatt
aagcccttaattggccgcgctctatatctgcagggagagaatcaaaaatcactggatatc
gaccttgcctttactgcccaagatggcctcaatgaagccatcacactggtcggacgcatt
gacgacctctgtgctaagggcttagtgaactaccgacccggtaccgccaacggccgtgat
ttaattcgcgtctacctaaggcatttgtgtatctgcgccatgggagagaataaacagcat
accagctatctactggatatcggccacttccatgcatttcacggcgtcaccccagagcaa
gcacgggcgcagctaagcctttggttaagtctgtttcaatcaggacaactgcatccatta
atgtttatgcccagaaccgccctcgcctacgttgaagccgaaggggaacatgcagataaa
cttatcgaggctcaaagtcagtggatagatgagcagagtcaattaggtgaagggtttgag
cctcactatcagcggctctttagttttcctgaagactttacagaagtacaatttggactc
actgccatgacgctcctctctcccatgctcagcctttatcacaaagacaggctgagtgaa
ctcactgcttttgtcgaagggggagcacagtaa
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