KEGG   Sphingobium sp. YBL2: TZ53_20775Help
Entry
TZ53_20775        CDS       T03855                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
syb  Sphingobium sp. YBL2
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:syb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    TZ53_20775
Enzymes [BR:syb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TZ53_20775
DNA repair and recombination proteins [BR:syb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TZ53_20775
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(4496312..4498807)
Genome map
AA seq 831 aa AA seqDB search
MADADPLSTYNRKRDFTRTREPAGKRGRSHGNGNGFIVQKHDATRLHYDFRLEMDGVLKS
WAVTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSA
SDIEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDAHAGSADELTARELTS
IRSGRTMAEIAAGTPPMSLKGKRGKAFDAAMAQADRAVPAKRRAKAGTGRMPAFRPPQLA
TLVDAVPTGNGWMHEIKYDGYRCLVSVSGGKVKIFTRSGLDWTDRFAPLPAEIGAMNLPA
ALIDGEIVAPGSDGNPDFSTLQQVLKGEGKAALHLFAFDLLHLDGQDLTAMPNIGRKEKL
AGLLGEGSAHVHVGDHVVGAGEKLFHAMCGAGQEGIISKRADAAYRGARTKNWLKVKCTR
RQEFVIVGWTPSSASGRSIRNLLLGQREGDGLVYAGKVGTGFNAANSAGLIAALGKRGRK
AAALSVPRSESKGAQWVRPDLVAEIAFAEFTAEHIVRHASFLGLREDKAAGDVRREEAMP
TPEAHSSIRISNPDRLIFPEAKITKGELADYYARMGAAMLPWIVRRPISLVRCPQGRAKK
CFFQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSEGLLACVQMGAIEFHGWGSSVADV
ERPDRMIFDLDPDEGLDFEDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAQ
WPEVKDFADRFARALATQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREP
ASVAAPVTWEELDGIDSAAHFTVKDAAVLLDRASSRDLRGWGEAHQPLPAH
NT seq 2496 nt NT seq  +upstreamnt  +downstreamnt
atggccgatgccgatccgctcagcacctataaccgcaagcgcgatttcacccgcacccgc
gagccggcgggcaagcgcggacgcagccacggcaatggcaacggcttcatcgtgcagaag
cacgatgcgacccgcctgcattacgacttccgcctggaaatggatggcgtgctcaagagc
tgggcagtgacgcgcggccccagcatcgatcccgcggacaagcggctggccgtccgcacg
gaggatcatccgctgtcctatgcgacgttcgaggggaccattcccaagggggaatatggc
ggcggcaccgtgatgctctgggacgagggcacatgggaacccgttccgggcaagagcgcg
agcgacatcgaaaaagggcatctccatttcatcctgcacgggcagcggatgcggggcgaa
tggctgctgatccgactgaagccgcggggcagggaaaagggagaaaactggctgctgcgc
aagatcgaggatgcccatgccggcagcgcggacgaactgaccgcgcgcgagctgacgagc
atcaggagcggtcgcaccatggcggaaatcgccgccggcacgccgcccatgtcgctgaag
gggaagaggggaaaagcctttgacgcggcgatggcgcaggccgaccgcgccgtcccggcg
aaaaggcgcgccaaggcagggacgggccgcatgccggccttccggccgccgcaactggcg
acgctggtcgatgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggg
tatcgctgtctggtttccgtatcgggcgggaaggtcaagatctttacgcggtcgggcctc
gactggacggatcggtttgcgccgttgccggcggaaatcggggcgatgaacctgcccgcc
gccctgatcgatggcgaaatcgtcgcccccggcagcgatgggaatccggatttctccacg
cttcaacaggtgttgaagggagagggaaaggcggcgctgcacctgttcgccttcgacctg
ctgcatctggacgggcaggatctgaccgccatgcccaatatcggccgcaaggaaaagctg
gccggcctgttgggggagggttccgcccatgtccatgtcggcgatcatgtcgtcggcgcc
ggggaaaagctgttccacgccatgtgcggcgccgggcaggaggggattatttccaagcgc
gccgacgccgcctatcgcggcgcgcgcacgaagaactggctgaaggtcaaatgcacccgc
cgtcaggaattcgtcatcgtcggctggactcccagcagcgccagcggccggtccatccgc
aacctgctgcttggccaacgggaaggggatggcctggtctatgcgggaaaggtcggcacg
ggcttcaacgcggccaacagcgccggactgatcgccgccctgggcaagcgcgggcgcaag
gccgccgcgctcagcgtgccgcgcagcgaaagcaaaggcgcccaatgggtccgccccgat
ctggtcgctgaaatcgcctttgccgaattcacggcggagcatatcgtccgccatgccagc
ttccttggcctgcgcgaggacaaggcagccggcgacgttcgacgcgaggaagccatgccg
acgcccgaagcccatagctcgatccggatcagcaatcccgaccggctgatctttccggag
gcgaagatcaccaagggcgagctggccgattattacgcccgcatgggcgcggcgatgctg
ccctggatcgtccgccggccgatcagcctggtccgctgtccgcagggccgggcgaaaaaa
tgcttcttccagaagcatgacagcggcagcttcggcgatcatgtcaaacatgtcccgatc
cgcgagaaggaagggaatgaggaggattatctctatatcgaggatagcgagggattgttg
gcctgcgtccagatgggcgcgatcgaatttcatggctgggggtccagtgtcgcggatgtg
gagcggccggatcgcatgatcttcgacctcgatcccgacgaggggctggactttgaggat
gtgaagaaggccgcgcgggacatccggcgggcgctggaggatctgggcctcaccagcttc
gccatgctgtccggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaa
tggccggaggtcaaggatttcgcggaccgcttcgcccgcgccctcgccacccaggaaccg
gaccgcttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactgg
ctgcgcaaccagcgcggcgcgacggctgtgctgccctatgtggtgcgcgcccgcgagccg
gcttccgtcgccgcccccgtcacctgggaagagctggacgggatcgacagcgccgcgcac
ttcacggtgaaggatgccgccgtcctgctggaccgcgcctcttcgcgggacctgcgcggc
tggggcgaggcgcatcagccgctgccggcgcattag

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