KEGG   Synechococcus elongatus PCC6301: syc1236_d
Entry
syc1236_d         CDS       T00163                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
syc  Synechococcus elongatus PCC6301
Pathway
syc03030  DNA replication
syc03410  Base excision repair
syc03420  Nucleotide excision repair
syc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:syc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    syc1236_d (lig)
   03410 Base excision repair
    syc1236_d (lig)
   03420 Nucleotide excision repair
    syc1236_d (lig)
   03430 Mismatch repair
    syc1236_d (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syc03032]
    syc1236_d (lig)
   03400 DNA repair and recombination proteins [BR:syc03400]
    syc1236_d (lig)
Enzymes [BR:syc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     syc1236_d (lig)
DNA replication proteins [BR:syc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     syc1236_d (lig)
DNA repair and recombination proteins [BR:syc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     syc1236_d (lig)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     syc1236_d (lig)
   MMR (mismatch excision repair)
    DNA ligase
     syc1236_d (lig)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      syc1236_d (lig)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_ligase
Other DBs
NCBI-ProteinID: BAD79426
CyanoBase: syc1236_d
UniProt: Q5N2P4
LinkDB
Position
1347351..1349390
AA seq 679 aa
MTASQTGPTTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPS
LITPDSPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGY
VCELKIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEV
RGEAFLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGP
NDWANLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKL
QSRRLQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGT
TVSRATLHNADRLRELDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLPEKCPEC
GQPVQRPEEEAVTRCVNSTCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIA
DLYRLDAPLLASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATF
TSAEALAQATPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRS
QALAGQTFVLTGTLPTLSRNEAKALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIAL
NIPQLNETQLLDLLAQAEG
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgaccgcttctcagacgggcccgaccaccaccgcgatcgcccagcgcgccagcgaattg
cgacagctgttgcagcaggccagctatgcctactacgtcctcgatcagccggtgatggaa
gatgcggtctacgatcgcctctatcgggagttgcaagatctagagcagcaacaccccagc
ctgattacgcccgacagccccacgcagcgcgtgggtgagcaaccggcaactggtttcgag
agtgtccagcatcggattccgctctacagtctcgaaaatgcttttgatgctgaagagtta
cggtcttgggatcagcgctggcgtaaactcgcgcccgatgttccggctgatgcaggctac
gtctgtgaactgaaaattgatggagccgcgatcgctctcagctacgaaaacggtctgctg
gtgcggggtgcaactcggggcgacggcacccgtggcgaagaaatcacagcgaatctacgc
acgattaaaagcattccactgcggctccaaaccgaccaaccgcccgagtggttagaagtg
cggggcgaagcttttctgtctctgactcgctttaagcaactcaacaccgaacgggagaag
catggtgaggctctttttgccaacccgcgtaacgccgccgccggaaccttacgccaactg
gatcctcgcattgtcgccgaacgtcagctcgacttttttgcctactcgattcaagggcct
aatgactgggcaaaccttgaccaagccgccagcctcgattgtcttcagagtctgggcttt
cgagtcgaaccgcaccgccaaacctgcccaacgctagcagaagtggagcagtacttcagc
gattgggatgcccgccgccgcgacctgccctatctcaccgatggcgtggttgtgaaactg
caatcacgccgcctgcaagacgagctgggcttcacccagaaatttccacgctgggcgatc
gccctcaaatatccagccgacgaagcgccgacccaactgcagcacgtcactgtccaagtt
gggcgaacgggagcactgacgcctgtggctgaattttctcccgttgcattggcgggaacc
accgtcagccgcgccaccctccacaacgccgatcgcttgcgggaactcgacttacacatt
ggcgacacgatcgtggtgcgcaaggcgggcgaaatcattcccgaagtcgtgcgcgtcctc
actgacctgcggccggccgatgctaaacctgtcgtgctgccggagaagtgtcctgaatgt
ggccagccggtgcaacggcctgaagaagaagccgtcacccgctgcgttaactcaacctgt
cctgcgatcgtgcggggggcactgacccattgggccagccgggatgccctcgacatcgaa
ggtctaggcgaaaagctcgtcgatcaactggtcagcaaaggactcgtcaacgcgatcgcc
gacctctatcgactggatgctccgctcctcgccagtctggagcgctttggtgaaaagtcg
gcacagaatttggttcaggcgatcgcaaagtcacgccagcaaccttggtcgcgagtgctc
tacggtctcgggattcgtcatgtgggatccgtcaacgccaaaaatctggcagccactttc
acctcagctgaggctctcgcgcaagcaacaccggacgaactggccgctgtctatggcatt
ggcagcgaaatcgccgacgcggttcaccagtggttcaccgttgccacgaatcaaaatctg
attgcagcgctagagcaagctgggctgcaactacatggggaagcagcgagcccgcgatcg
caagctttggccggtcaaacctttgtcctgactggcacgctgccgaccctgagccgaaac
gaagccaaagccttgattgaagcggcgggcggcaaagtctcgggctccgtcagcaagaaa
accagctatgttgtcgccggcgaagaagcgggaagcaagctggaaaaagcgatcgccctc
aacattccccaactcaacgaaacacaactgctggacttgcttgcccaagcagaggggtag

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