Synechococcus elongatus PCC6301: syc1236_d
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Entry
syc1236_d CDS
T00163
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
syc
Synechococcus elongatus PCC6301
Pathway
syc03030
DNA replication
syc03410
Base excision repair
syc03420
Nucleotide excision repair
syc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
syc1236_d (lig)
03410 Base excision repair
syc1236_d (lig)
03420 Nucleotide excision repair
syc1236_d (lig)
03430 Mismatch repair
syc1236_d (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syc03032
]
syc1236_d (lig)
03400 DNA repair and recombination proteins [BR:
syc03400
]
syc1236_d (lig)
Enzymes [BR:
syc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
syc1236_d (lig)
DNA replication proteins [BR:
syc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
syc1236_d (lig)
DNA repair and recombination proteins [BR:
syc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
syc1236_d (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
syc1236_d (lig)
MMR (mismatch excision repair)
DNA ligase
syc1236_d (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
syc1236_d (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAD79426
CyanoBase:
syc1236_d
UniProt:
Q5N2P4
LinkDB
All DBs
Position
1347351..1349390
Genome browser
AA seq
679 aa
AA seq
DB search
MTASQTGPTTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPS
LITPDSPTQRVGEQPATGFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGY
VCELKIDGAAIALSYENGLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEWLEV
RGEAFLSLTRFKQLNTEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSIQGP
NDWANLDQAASLDCLQSLGFRVEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKL
QSRRLQDELGFTQKFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGT
TVSRATLHNADRLRELDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLPEKCPEC
GQPVQRPEEEAVTRCVNSTCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIA
DLYRLDAPLLASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATF
TSAEALAQATPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQLHGEAASPRS
QALAGQTFVLTGTLPTLSRNEAKALIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAIAL
NIPQLNETQLLDLLAQAEG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcttctcagacgggcccgaccaccaccgcgatcgcccagcgcgccagcgaattg
cgacagctgttgcagcaggccagctatgcctactacgtcctcgatcagccggtgatggaa
gatgcggtctacgatcgcctctatcgggagttgcaagatctagagcagcaacaccccagc
ctgattacgcccgacagccccacgcagcgcgtgggtgagcaaccggcaactggtttcgag
agtgtccagcatcggattccgctctacagtctcgaaaatgcttttgatgctgaagagtta
cggtcttgggatcagcgctggcgtaaactcgcgcccgatgttccggctgatgcaggctac
gtctgtgaactgaaaattgatggagccgcgatcgctctcagctacgaaaacggtctgctg
gtgcggggtgcaactcggggcgacggcacccgtggcgaagaaatcacagcgaatctacgc
acgattaaaagcattccactgcggctccaaaccgaccaaccgcccgagtggttagaagtg
cggggcgaagcttttctgtctctgactcgctttaagcaactcaacaccgaacgggagaag
catggtgaggctctttttgccaacccgcgtaacgccgccgccggaaccttacgccaactg
gatcctcgcattgtcgccgaacgtcagctcgacttttttgcctactcgattcaagggcct
aatgactgggcaaaccttgaccaagccgccagcctcgattgtcttcagagtctgggcttt
cgagtcgaaccgcaccgccaaacctgcccaacgctagcagaagtggagcagtacttcagc
gattgggatgcccgccgccgcgacctgccctatctcaccgatggcgtggttgtgaaactg
caatcacgccgcctgcaagacgagctgggcttcacccagaaatttccacgctgggcgatc
gccctcaaatatccagccgacgaagcgccgacccaactgcagcacgtcactgtccaagtt
gggcgaacgggagcactgacgcctgtggctgaattttctcccgttgcattggcgggaacc
accgtcagccgcgccaccctccacaacgccgatcgcttgcgggaactcgacttacacatt
ggcgacacgatcgtggtgcgcaaggcgggcgaaatcattcccgaagtcgtgcgcgtcctc
actgacctgcggccggccgatgctaaacctgtcgtgctgccggagaagtgtcctgaatgt
ggccagccggtgcaacggcctgaagaagaagccgtcacccgctgcgttaactcaacctgt
cctgcgatcgtgcggggggcactgacccattgggccagccgggatgccctcgacatcgaa
ggtctaggcgaaaagctcgtcgatcaactggtcagcaaaggactcgtcaacgcgatcgcc
gacctctatcgactggatgctccgctcctcgccagtctggagcgctttggtgaaaagtcg
gcacagaatttggttcaggcgatcgcaaagtcacgccagcaaccttggtcgcgagtgctc
tacggtctcgggattcgtcatgtgggatccgtcaacgccaaaaatctggcagccactttc
acctcagctgaggctctcgcgcaagcaacaccggacgaactggccgctgtctatggcatt
ggcagcgaaatcgccgacgcggttcaccagtggttcaccgttgccacgaatcaaaatctg
attgcagcgctagagcaagctgggctgcaactacatggggaagcagcgagcccgcgatcg
caagctttggccggtcaaacctttgtcctgactggcacgctgccgaccctgagccgaaac
gaagccaaagccttgattgaagcggcgggcggcaaagtctcgggctccgtcagcaagaaa
accagctatgttgtcgccggcgaagaagcgggaagcaagctggaaaaagcgatcgccctc
aacattccccaactcaacgaaacacaactgctggacttgcttgcccaagcagaggggtag
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