Synechococcus sp. PCC 6312: Syn6312_2005
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Entry
Syn6312_2005 CDS
T02370
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syne
Synechococcus sp. PCC 6312
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syne03032
]
Syn6312_2005
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_2005
Enzymes [BR:
syne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Syn6312_2005
DNA replication proteins [BR:
syne03032
]
Prokaryotic type
DNA Topoisomerases
Syn6312_2005
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Syn6312_2005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
AFY61137
UniProt:
K9RVL3
LinkDB
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Position
1972522..1975188
Genome browser
AA seq
888 aa
AA seq
DB search
MSTLVIVESPTKARTIRKYLPKNYRVEASMGHVRDLPRSAADIPANLKGLDWATLGVNVE
EGFEPLYIVPKDKQKVVKELKSALADADELLLATDEDREGESISWHLLQLLQPKVPTKRM
VFHEITAEAIQAALADCRDVDQKLVRAQETRRILDRLVGYTLSPLLWRKIAPHLSAGRVQ
SVAVRLLVNRERERLAFHSGSYWDLKATLDKNKSPFTATLIELGGQRVATGGDFDPATGQ
IQANRSVVLLNAATAQALRDRLLQTNWVVSQLESRPQTRKPAPPFTTSTLQQEANRKLHL
SAKDTMRTAQKLYEEGFITYMRTDSVHLSEQAITAARDCVSQMYGKNFLAPKPRQFTTKS
KGAQEAHEAIRPAGSSFVLPADTGLGGRDLELYDLIWKRTIASQMDEARLTLITAQIQAD
DAIFRASGKQIDFPGFFRAYVEGSDDPDAALESQEVILPALAQGDELTCKKLDALGHETQ
PPARFTEATLVKALESEGIGRPSTYATIISTILDREYAIRRGNALEPTFTAFAVTGLLEQ
NFPDLVDLRFTARMEQTLDDISTGEVNWLPYLEEFYLGDKGLETQVKEREQGIDPSSARA
IHLPNVKAEVVVGRYGPFVVMENGDAPVKASLPQDATPGSLNHEQIEQLIRQKLEGPDKL
GLHPETGEPIFLLSGRFGPYVQLGDATTENPKPKRASLPKGITSEEVTLDLAVTLLSLPR
TLGLHPETGKLIQANQGRFGPYVVIDPDGEKEYRSLKAGDDLFTITLDRALEILAEPKAT
RGRAKKEALKNLGNHPSDDAPVQIFNGPYGPYVNHGKVNASLPEGVTVEEMTLELALPLL
AEKAPKGNGRTKSTKTTATTKSTRQKTTTRKTAAKKSTATRAKKSTSS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccttgtcattgttgaatcgcccacaaaagcccgcacgattcgtaaatatcta
cccaaaaactaccgggtcgaagcctccatgggtcatgtgcgcgatttacctcggagtgcc
gcagatattcccgctaatctcaagggcctggattgggccaccttaggtgtcaatgtggaa
gaggggtttgaaccactctatatcgtgccgaaagataagcaaaaggtagttaaggaactg
aaatctgccctggctgatgccgatgaactcctgttagccactgacgaagatcgggaagga
gaaagcattagctggcatttactccaactgctccagcccaaagtcccaaccaaacggatg
gtattccatgaaattaccgccgaggcgattcaagcggccctagcagactgtcgagacgtg
gatcaaaagctagtccgggcccaggaaactcgccggatattagatcgcttggtcggctat
accctttctcccctactgtggcgcaaaattgccccccatctttcagccgggcgggtacag
tccgtcgccgtgcgcttattggtaaatcgggaacgggagcggctagcgtttcattccggc
agctattgggacttaaaagcaaccctagataaaaacaaatctccctttaccgccacctta
attgaactgggagggcagcgcgtcgccactggaggtgattttgaccctgctacgggacaa
atccaggccaatcgcagtgtggttttacttaatgccgccacagcccaggccctgcgcgac
cgacttttacaaaccaactgggtagtgagtcaattagagtcgcgcccccaaacccgtaag
ccagccccacccttcaccacttcgaccctgcaacaggaagccaaccgcaagctccacctc
tcagccaaggacacgatgcggacagcccagaagctctacgaagaagggtttatcacctat
atgcggacggattcggtgcatttatcggagcaagcgatcaccgccgcccgtgattgtgtc
agccagatgtatggcaagaactttctcgccccgaaaccgcgccagtttacaaccaaatcc
aaaggggcccaggaagcccatgaagcaattcggccggccgggagtagttttgtcttgcct
gcagacacgggtttgggtggccgggatttggaactgtacgacttgatttggaaacggacg
attgccagtcagatggacgaagcgcggttaaccctgatcactgcccaaatccaggccgat
gatgcgatctttcgggccagtggcaagcaaattgattttccagggtttttccgggcctat
gtcgaagggtctgatgatcccgatgccgccctcgaaagccaagaggtcattctcccggcc
ctagcccaaggggacgagctgacctgtaaaaaactcgatgcccttggccatgaaacccaa
cccccggcccgattcacagaagcgaccttggttaaagccctggaaagtgaaggcattggc
cgccccagtacctacgccactatcatcagcaccattttggatcgggaatatgccattcgc
cgcggcaatgccttagaacccacgtttacagcctttgccgtgaccgggcttctagagcaa
aatttcccagatctggttgatttgcgtttcacagcccggatggagcaaaccttagatgac
atttctacaggggaggtgaactggttaccctacctagaggagttttatttaggggataag
ggcctggaaactcaggtcaaggaacgggaacaggggattgatcccagttcagcccgggca
attcatttacccaatgtcaaagccgaggttgttgttggtcgctatggtccctttgtggtc
atggagaatggggatgcccccgttaaagcctccctgccccaagatgccacccctggcagt
ctcaaccatgagcaaattgaacaactcattcgtcaaaagctggaaggccccgacaaatta
ggcctccatcctgaaactggggagcctattttcttgctctcaggccggtttggcccctat
gtgcaactaggtgatgccacaacagagaaccctaaacccaagcgcgcctctttaccgaag
gggattacctctgaagaagtaaccttagatttggcggtgacgttgttatccctgccgcgc
accctcggacttcatcctgaaacgggcaaactcatccaggccaatcaaggtcggtttggc
ccctatgtggtgatagatcccgatggggaaaaagaataccgttctctgaaagctggggat
gacctgtttaccatcaccttagaccgtgctttagaaatcctggcagaaccaaaggctacc
cgtggccgcgccaagaaagaagctctgaaaaacttaggcaaccatcccagtgatgacgca
cccgtacagatttttaatggtccctatggcccctatgtcaatcatggcaaggtgaatgct
tcattgccggaaggggtcacagtcgaggagatgaccttagagttagcactacccttgtta
gccgaaaaagcccccaaagggaacggccggactaaatccaccaaaactacagccacaact
aaatctacccgccagaaaaccacaactcgcaaaaccgcagctaaaaagtcaactgcgacc
agagccaagaaatccacttccagttag
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