Synechocystis sp. PCC 6803 GT-I: SYNGTI_2593
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Entry
SYNGTI_2593 CDS
T01777
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
syt
Synechocystis sp. PCC 6803 GT-I
Pathway
syt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNGTI_2593 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syt03019
]
SYNGTI_2593 (deaD)
03009 Ribosome biogenesis [BR:
syt03009
]
SYNGTI_2593 (deaD)
Messenger RNA biogenesis [BR:
syt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYNGTI_2593 (deaD)
Ribosome biogenesis [BR:
syt03009
]
Prokaryotic type
rRNA helicases
SYNGTI_2593 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAL30340
LinkDB
All DBs
Position
2885362..2886840
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AA seq
492 aa
AA seq
DB search
MTNTLTSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAA
FALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS
LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR
QTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPIL
EMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV
ATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI
ENRLKQQIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEYDAQAIA
AAALQMIYDQSCPHWMKSDWEVPEVDFNKPVLRRGRNAGGGQNKSGGGYQGKPGKPRRSS
GGRRPAYSDRQQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgactaatactttgactagtaccttcgctgaccttggtctttctgaaaaacgttgtcaa
ctcttggccgacattggctttgaggctcccacccaaattcaaactgaagccattcccctg
cttttgagcggccgggacatgctggcccaatcccaaaccggcacggggaaaaccgccgcc
tttgccctacctttgatggaccgcattgacccagagggggacttgcaagccttaattttg
acccccacccgggaattggcccagcaggtggcggaagcaatgaaggacttttcccacgag
cgccgtctatttattttgaatgtgtacggtggtcaatccatcgagcggcaaattcgcagc
ctagaacggggtgtgcaaattgtggtgggcacccctggacgggtgattgacctaattgac
cgcaaaaaacttaaattagaaaccatccaatgggtggtgctggatgaagcggacgaaatg
ctgagcatgggcttcattgacgatgtgaaaaccattctgcgtaaaactccccccaccagg
cagaccgcttgtttttctgccaccatgccccgggaaatcaaagaattggtcaaccaattt
ttaaatgatcccgccctggtgaccgttaaacagacccaatccacccccacccgcattgag
cagcagctttatcacgtgccccgcggttggtctaaggctaaagcgctacaaccgattctg
gaaatggaagatcccgaatccgccattatttttgttcgtactaaacaaaccgccgcagac
ctcaccagtcgtttgcaagaagcgggccatagcgtggatgagtaccacggcaacctgagc
caatcccaacgggagcgtttggtgcaccgtttccgggatggcaaaattaagctggtggtg
gccacggacatcgccgcccggggtttagatgtgaataacctcagccatgtggtcaacttt
gatttacccgataacgctgaaacctacattcaccgcattggccgcaccggtcgggctggt
aagactggtaaggcgatcgccttggtggaacccattgaccgtcgtttactgcgatccatc
gaaaaccgtctgaaacaacaaattgaagtttgtaccattcctaaccgttcgcaggtggaa
gccaagcggattgaaaaactgcaggaacaactcaaggaagccctgaccggtgagcggatg
gcctccttccttcctttagtgcgggaattgagcgatgagtacgatgcccaggcgatcgcc
gctgctgctttacagatgatctatgaccagagctgtccccattggatgaaatccgattgg
gaagtgccggaagttgatttcaacaagcccgttctccgtcgtggccgcaatgctggcggt
ggccagaacaaaagtgggggtggttaccaaggtaaaccgggcaaaccccgtcgctccagc
ggtggccgtcgtcctgcctatagtgatcgccaacagtaa
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