KEGG   Tepidanaerobacter acetatoxydans Re1: TepiRe1_1393
Entry
TepiRe1_1393      CDS       T02434                                 
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tae  Tepidanaerobacter acetatoxydans Re1
Pathway
tae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TepiRe1_1393 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tae03019]
    TepiRe1_1393 (rnjA)
Messenger RNA biogenesis [BR:tae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TepiRe1_1393 (rnjA)
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: CCP26131
UniProt: F4LU97
LinkDB
Position
1325930..1327603
AA seq 557 aa
MSKNEQDKLLIIPLGGMGEIGKNMTVIQYGKEILLIDSGLMFPEEEMLGIDIVIPDITYL
IENKEYIKGILITHGHEDHIGALPYVLQQINAPLYGTKLTLGLVEGKLKETRLNKKNISM
NVVKPPTTINIGSFAVDFIRVNHSIPDAVGFAIHTPVGIICHTGDFKLDQTPVNGEKADL
HKFAELGSKGVLALLSDSTNAEREGYTMSEKVVGHTIEDIFKTVTGRIIVATFASNIHRI
QQIFDAAYKNDRKVAVVGRSMVNVVNIALDLGYLTIPKSLLMDLDELNRLPKEKVVIITT
GSQGEPMSALTRMAMSEHKKVEIMPEDTVLISASPIPGNEKFIARTIDHLFKKGANVIYE
AISGVHVSGHASQEELKLMLNLVRPKFFIPVHGEYRHLVHHSHLAMEVGIPSENIFIVEN
GRILEFTKDSCKMAGRVTAGKVLVDGLGVGDVGNIVLRDRKQLSQDGILIVVVAIDKETG
EVVSGPDIISRGFVYVRESEELMEQAREKVKQALRKCQEENISEWSTIKSQVREHLGKLL
FEQTRRRPMILPIIMEV
NT seq 1674 nt   +upstreamnt  +downstreamnt
ttgtcaaaaaatgaacaagacaaattacttatcattcccttgggtgggatgggtgagata
ggtaaaaatatgacagttattcagtatggtaaagagattttgctaatcgattcgggttta
atgtttcccgaagaggaaatgcttggaatagacatagtaattccggatataacatatctt
attgaaaataaagagtatataaagggtattctaataacacatggacatgaagaccatatt
ggagcactcccttatgtacttcaacagataaatgccccactatatggaacaaaattgact
ttaggtttggttgaaggcaagttaaaggaaacaaggcttaataaaaaaaatatatcgatg
aacgtagtaaagccgccaactactatcaatataggcagttttgctgtggatttcatcagg
gtaaatcatagtatcccagatgcagttggatttgcaattcatacacctgttggcataatt
tgtcatacgggggattttaaattagatcaaactcctgtaaatggcgaaaaagcagatctt
cataaatttgcagaattaggttcaaagggtgtacttgcacttttgtccgacagcactaat
gcagagcgcgaaggatatactatgtcagagaaggtagtaggtcataccattgaagatata
tttaaaacagttacaggtcgaattatagtagcgacttttgcgtcaaatatacatcgaatt
cagcagatttttgatgccgcatataagaacgataggaaagtggccgtagtaggcagaagt
atggtgaatgtggtgaatattgcgctggacttaggttatcttaccatacccaaatcttta
ttgatggatttagatgaactaaaccgtttgccaaaagaaaaagtcgtaataattaccaca
gggagtcagggtgaacctatgtctgcattaactcgaatggccatgtctgagcataaaaaa
gttgagataatgcctgaagacacagtgcttatttctgcaagtcccattccgggaaatgaa
aaattcatagctagaacgatagaccatttatttaaaaagggtgcaaatgttatatacgaa
gcaatatccggtgttcatgtttcaggtcatgcaagtcaagaagaattaaaactaatgctg
aaccttgtaagacccaaatttttcatacctgttcatggagaatataggcatcttgtccat
cattcgcatttagctatggaagttggcattccttcagaaaatattttcatcgttgagaac
ggtagaattttagaatttactaaggattcatgcaaaatggcagggagggttactgccggt
aaggttcttgttgacggtttaggtgtaggggatgtaggaaatatagtattaagggaccgc
aaacaactttcacaagatggtattttgattgttgtagtagccatagacaaggaaacaggt
gaagttgtttcaggtccggatataatctcaagaggttttgtatatgtaagagagtctgaa
gaacttatggaacaagctcgcgaaaaagttaaacaagctttaagaaaatgtcaggaagaa
aatattagtgaatggtctacaataaagtctcaagtaagggaacatttaggcaagctcttg
tttgaacagactcgcagaaggcccatgatattacctattattatggaagtatga

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