Tepidanaerobacter acetatoxydans Re1: TepiRe1_1393
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Entry
TepiRe1_1393 CDS
T02434
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tae
Tepidanaerobacter acetatoxydans Re1
Pathway
tae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TepiRe1_1393 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tae03019
]
TepiRe1_1393 (rnjA)
Messenger RNA biogenesis [BR:
tae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TepiRe1_1393 (rnjA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
CCP26131
UniProt:
F4LU97
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All DBs
Position
1325930..1327603
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AA seq
557 aa
AA seq
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MSKNEQDKLLIIPLGGMGEIGKNMTVIQYGKEILLIDSGLMFPEEEMLGIDIVIPDITYL
IENKEYIKGILITHGHEDHIGALPYVLQQINAPLYGTKLTLGLVEGKLKETRLNKKNISM
NVVKPPTTINIGSFAVDFIRVNHSIPDAVGFAIHTPVGIICHTGDFKLDQTPVNGEKADL
HKFAELGSKGVLALLSDSTNAEREGYTMSEKVVGHTIEDIFKTVTGRIIVATFASNIHRI
QQIFDAAYKNDRKVAVVGRSMVNVVNIALDLGYLTIPKSLLMDLDELNRLPKEKVVIITT
GSQGEPMSALTRMAMSEHKKVEIMPEDTVLISASPIPGNEKFIARTIDHLFKKGANVIYE
AISGVHVSGHASQEELKLMLNLVRPKFFIPVHGEYRHLVHHSHLAMEVGIPSENIFIVEN
GRILEFTKDSCKMAGRVTAGKVLVDGLGVGDVGNIVLRDRKQLSQDGILIVVVAIDKETG
EVVSGPDIISRGFVYVRESEELMEQAREKVKQALRKCQEENISEWSTIKSQVREHLGKLL
FEQTRRRPMILPIIMEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaaaatgaacaagacaaattacttatcattcccttgggtgggatgggtgagata
ggtaaaaatatgacagttattcagtatggtaaagagattttgctaatcgattcgggttta
atgtttcccgaagaggaaatgcttggaatagacatagtaattccggatataacatatctt
attgaaaataaagagtatataaagggtattctaataacacatggacatgaagaccatatt
ggagcactcccttatgtacttcaacagataaatgccccactatatggaacaaaattgact
ttaggtttggttgaaggcaagttaaaggaaacaaggcttaataaaaaaaatatatcgatg
aacgtagtaaagccgccaactactatcaatataggcagttttgctgtggatttcatcagg
gtaaatcatagtatcccagatgcagttggatttgcaattcatacacctgttggcataatt
tgtcatacgggggattttaaattagatcaaactcctgtaaatggcgaaaaagcagatctt
cataaatttgcagaattaggttcaaagggtgtacttgcacttttgtccgacagcactaat
gcagagcgcgaaggatatactatgtcagagaaggtagtaggtcataccattgaagatata
tttaaaacagttacaggtcgaattatagtagcgacttttgcgtcaaatatacatcgaatt
cagcagatttttgatgccgcatataagaacgataggaaagtggccgtagtaggcagaagt
atggtgaatgtggtgaatattgcgctggacttaggttatcttaccatacccaaatcttta
ttgatggatttagatgaactaaaccgtttgccaaaagaaaaagtcgtaataattaccaca
gggagtcagggtgaacctatgtctgcattaactcgaatggccatgtctgagcataaaaaa
gttgagataatgcctgaagacacagtgcttatttctgcaagtcccattccgggaaatgaa
aaattcatagctagaacgatagaccatttatttaaaaagggtgcaaatgttatatacgaa
gcaatatccggtgttcatgtttcaggtcatgcaagtcaagaagaattaaaactaatgctg
aaccttgtaagacccaaatttttcatacctgttcatggagaatataggcatcttgtccat
cattcgcatttagctatggaagttggcattccttcagaaaatattttcatcgttgagaac
ggtagaattttagaatttactaaggattcatgcaaaatggcagggagggttactgccggt
aaggttcttgttgacggtttaggtgtaggggatgtaggaaatatagtattaagggaccgc
aaacaactttcacaagatggtattttgattgttgtagtagccatagacaaggaaacaggt
gaagttgtttcaggtccggatataatctcaagaggttttgtatatgtaagagagtctgaa
gaacttatggaacaagctcgcgaaaaagttaaacaagctttaagaaaatgtcaggaagaa
aatattagtgaatggtctacaataaagtctcaagtaagggaacatttaggcaagctcttg
tttgaacagactcgcagaaggcccatgatattacctattattatggaagtatga
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