Thiobacillus denitrificans: Tbd_1656
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Entry
Tbd_1656 CDS
T00275
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tbd_1656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_1656
Enzymes [BR:
tbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tbd_1656
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tbd_1656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAZ97609
UniProt:
Q3SIB9
LinkDB
All DBs
Position
1738365..1741805
Genome browser
AA seq
1146 aa
AA seq
DB search
MALLFHDPALAVRRASGLAGAADALYLAEAARSVAPLVIVCASAWDANRLTEELRWFDPA
LRVCAFPDWETLPYDNFSPHPDLLSERLATLYQISRGEFDLAVVALSTALHRLAPPSFLA
AHTFFLKQKDRLDEAAFRAQMTLGGYSNVNQVFAPGEFSVRGGLIDLFPMGSAVPYRIDL
FDNEIETLRAFDVDTQRSIYPVNEVRLLPAREFPLDEAGVTRFRQNFRERFEGDPSKSKL
YQDVSNGLAPAGIEYYLPLFFDATATLFDYLPQPTRLVAHGALDAAGQAFWSEAQGRHRL
LAGDKDRPLLPPADLFLATDAFFSRAKSYERFDVAQAGDGLARPLPPISVDRREAHPVAK
LRSFIDGFRGKTLIVAPSAGRRETLHEYLAEHGLDATPCDGWAGCEAGRERILLTHGPLA
EGFVTHDEALAVITETELYAIPPKTRRAREARATQIDSLLRDLSELKPGDPVVHAQYGVG
QYLGLATMDLGDGDTEFLQLEYAKGDKLYVPVANLHLISRYSGASEGEVPLHRLGTDQWE
KARRRAMQAARDTAAELLNLYALRAAREGHAFSFSLHDYEAFAEGFGYEETPDQAAAIAA
VMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFNNFSD
RFSQWPVKLAELSRFRTAKEQAAALEALKDGRIDIVIGTHRLIQKDVKFARLGLVILDEE
HRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAVKTFVR
SFSGGLIREAVLRELKRGGQVYFLHNEVSTIQNMRERLEKLLPEARIRVGHGQMSERELE
QVMRDFYQQRYDILLCTTIIETGIDIPTANTILINRADKFGLAQLHQLRGRVGRSHHQAF
AYLLVEEDRTLTPQAKKRLEAIQLMEELGSGFHLARHDLEIRGAGEVLGEKQSGEILEVG
FSLYNDMLAGAVASLKAGKEPDMSQPLDVVSEINLHLPALLPADYCPDVHERLVLYKRLA
SCQTPDDLTAMQEELVDRFGELPDTTRALLAVHRLRMATRAYGIARLDVSGEGMSVQFVP
SPPVDPGRIIALIQGKAGYKLAGPDRLKLSVSLPDLARRVGAVNAFLAALGPPVGDSLSS
ATHHSS
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttctgttccacgaccctgcgctcgccgtccgcagagcatccggcctcgccggc
gcggccgacgccctgtacctggcggaggcggcgcgcagcgtcgcgccgctcgtcatcgtg
tgtgcaagcgcctgggacgcgaaccggctgaccgaggaactgcgctggttcgaccccgcg
ctgcgggtatgcgccttccccgactgggagacgctgccctacgacaatttctcgccccac
cccgacctgctctcggagcggctcgcgacgctctatcagatttcgcgcggcgagttcgac
cttgcagtcgtcgcgctgtcgacggccttgcaccggctggcgccgccgtcttttctcgcc
gcccacacctttttcctcaagcagaaggaccgcctcgatgaagcggccttccgcgcgcag
atgacgctcggcggctacagcaacgtgaaccaggtgttcgcgccgggcgaattctcggtc
cgcggcggactgatcgacctcttcccgatgggcagcgcggtgccctaccgcatcgacctc
ttcgacaacgagatcgaaaccctgcgcgcgttcgacgtcgacacccagcgcagcatctac
ccggtgaacgaggtgcgcctcttgccggcgcgcgaatttccgctcgacgaggccggcgtc
acgcgcttccggcagaatttccgcgaacgcttcgaaggcgacccctcgaagtccaagctg
taccaggacgtcagcaacggcctcgcgccggccggcatcgaatactacttgccgctgttt
ttcgacgcgaccgcgaccctcttcgactacctgccgcagcccacgcggctggtcgcccac
ggcgcgctcgacgcggccggtcaggcgttctggagcgaggcgcaaggtcgccatcgcctg
ctcgcaggcgacaaggacaggccgctgctgccgcctgccgatctgttccttgcgaccgac
gccttcttcagccgcgcgaaaagctacgaacggttcgacgtcgcgcaggccggcgatggc
ctggcacgtccgcttcccccgatctcggtcgaccgccgcgaggcacatccggtcgccaag
ctgcgcagcttcatcgacggcttccgcggcaagacgctgatcgtcgcgccgtcggccgga
cgacgcgaaaccctgcacgaatacctcgccgagcacggtctcgacgccacgccctgcgac
ggatgggccggctgcgaggctgggcgcgaaaggattctgctgacccatggcccgcttgcc
gaaggcttcgtgacgcacgatgaggcgctcgccgtcatcaccgaaaccgagctctacgcg
atcccgccgaagacccgccgcgcccgcgaagcgcgggccacgcagatcgacagcctgttg
cgcgacctgtcggaactgaagcccggcgatcctgtcgtccacgcgcagtacggtgtcggc
cagtacctcggcctggcgaccatggacctcggcgacggcgacaccgagttcctgcagctc
gaatacgccaagggcgacaagctctacgtcccggtcgccaacctgcatctgatctcgcgc
tattccggtgcgagcgaaggcgaggtcccgctccacaggctcggcaccgaccagtgggag
aaggctcgccgccgcgccatgcaggctgcgcgcgacaccgccgccgagctgctgaatctg
tacgccctgcgcgccgcgcgcgaaggccacgcgttcagtttttcgctgcacgactacgag
gccttcgccgagggcttcggctacgaggagacccccgaccaggccgcggcgatcgcggcc
gtgatggccgacatgcagtcgggcaagccgatggaccgcctcgtgtgcggcgacgtcggc
ttcggcaagaccgaggttgcgttgcgcgccgcgttcatggccgtgatgggcggctaccag
gtcgcggtgctggtgccgaccacactgctggcggagcaacacttcaacaacttctcggac
cgcttctcgcaatggcctgtgaagctcgccgagctgtcacgtttccgcaccgcaaaggaa
caggcggcagcacttgaggcgctgaaggacggcaggatcgacatcgtcatcggcacccac
aggctgatccagaaggacgtcaagttcgcccgtctgggcctcgtcattctcgacgaggaa
catcgcttcggcgtgcggcagaaggagcagctgaaggcgctgcgcgccgaggtcgacgtg
ctgacgctcaccgcgacgccgatcccgcgcacgctcgcgatgtcgctcgagggcattcgc
gacttctcggtcattgcaacggcgccgcagaagcggctcgcggtcaagactttcgtccgg
tccttctccggcgggctgatccgggaggccgtgctgcgcgaactcaagcgcggcggccag
gtgtacttcctgcacaacgaggttagcaccatccagaacatgcgcgagcggctcgagaaa
ctgctgcccgaggcgcgcatccgcgtcggccacggccagatgagcgagcgcgaactcgag
caggtgatgcgcgacttctaccagcagcgctacgacatcctcttgtgcacgacgatcatc
gagactggcatcgacatcccgaccgcgaacaccattctcatcaatcgcgccgacaagttc
ggcctcgcccagctgcatcaattgcgcgggcgcgtcgggcgctcgcaccaccaggccttc
gcctatctgctcgtcgaagaggaccgcacgctgacgccgcaggcgaaaaagcggctcgag
gcgatccagctcatggaagaactcggctcgggcttccacctcgcccgccatgacctcgag
atccgcggcgccggcgaggtgctgggcgagaagcagagcggcgagatcctcgaggtcggc
ttctcgctgtacaacgacatgctggccggcgcggtggcgagcctgaaggccggcaaggag
cccgacatgagccagccgctcgacgtggtctccgaaatcaacctgcacctgccggcgctg
ctgcccgccgactactgcccggacgtccacgagcggctggtgttgtacaaacggctggcg
agctgccagaccccggacgatctgacggcgatgcaggaggaactggtcgaccgcttcggc
gaactgccggacacgacacgcgccctgctcgcggtgcatcgcctgcgcatggcgacccgc
gcctacggcatcgcccgcctggacgtttccggagaggggatgagcgtgcaattcgtcccc
agcccgcccgtcgatccgggtagaatcatcgctctgatccagggcaaggccggctacaag
ctcgccggtccggaccggctgaagctgagcgtgagcctgcctgaccttgccaggcgggtc
ggcgcggtcaacgccttcctcgccgcgctcggcccgcccgtgggcgactccctttcatcc
gcaacccatcattcctcatga
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integrated database retrieval system
