KEGG   Theobroma cacao (cacao): 18589404Help
Entry
18589404          CDS       T02994                                 

Definition
(RefSeq) DNA ligase 4
  KO
K10777  
DNA ligase 4 [EC:6.5.1.1]
Organism
tcc  Theobroma cacao (cacao)
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tcc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    18589404
Enzymes [BR:tcc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     18589404
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     18589404
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
9
AA seq 1195 aa AA seqDB search
MTEEIKLSVVVSLFSWIQKSKTSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAICLIDALGMSRDSPDALRLINWRKGGANTGANAGNFALVAAEVLQRRQGTA
SGGLTIKELNDLLDRLASAESRAEKTTVLSSLINKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKMVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVRDAAAAWK
KLHGKEVLVECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYERGMSNIIAQNILVDRCILD
GEMLVWDTTLSRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPYGGLNAHRPPGEPCWSCLAYSVDDVERFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYIHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFVSFCRVGTGLADDELEAVVNKLKPYFRKYEYPKKTQPSFYQVTNNSKERPD
VWIESPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLNVQSFVELVH
SSNGTTQKGTVQGDVQDGKSRHKEHTRKAEKKAVSIVPSHFIQTDTSSVKGETLIFTNLI
FYFVNVPTTYSLDSFHKIIVEHGGMFSMNLNKPVTHCVAAESKGFKYQAAKLHGEIIHYS
WVLDCCSQKMLLPLQPKYFLFLSESSKKKLQQEVDEYSDPYYWDLDLADIKQLLNNIQRS
ENANTIDYYRKKYCPKERWSSFHGCSVYFYCSAQSLKADWQVLLRLTLRRLKLEVLMGGG
KISKDLKHATHLVILSVPGLDVDFDSLIKSFSCAEKHLFWKKGLHVVGSQWLEDCLERGQ
KLQEDLYSLKLSEVEETNLLECELDQNLKEAIPDFNSVQNQVMPVSCESPIKQRGCKVHL
QESMPLVTPNYGNRKRRPAGKNAKKGKTVVSQCRRVPRRCGKMSVKINEDESEESGSDDK
TNVEEIEKGEGNTEGYGIVGRENSEIRRNQVAEDIELSCSAKPVELEAAENMSKEWSDKA
PEVEMCEPNNDQSCKKAEKYDLMELDQENCGAKSEKLEVMVDPVQAMLLDMIPSLGIKHV
EATNSFVENEKPPADNNAEIPVVEDDKLDADFIAPPVKKKKVSYKDVAGELLKDW
NT seq 3588 nt NT seq  +upstreamnt  +downstreamnt
atgacggaggaaatcaagttgagcgtggtagtgagcctcttctcttggatccagaaaagc
aaaacatcagccaagaagcggtccaagtttcgaaaattcctagacaccttttgcaagcct
tccgactacttcagcgccatgcggcttatccttccgtcgctggacagagagcgtggcaca
tacggcctcaaggaatcggtgctcgccatctgcctcattgacgctcttggcatgtccagg
gactcccccgatgctctccgtcttatcaattggcgcaaaggtggtgcaaacaccggcgcc
aatgctggaaacttcgctcttgtcgccgctgaggttctgcagcgtaggcagggaacggct
tccggtggactcaccatcaaggaattgaatgacttgcttgatcgcttagcttctgctgaa
agcagggccgagaagacaacagtcctttcttctttgattaataagacaaatgcacaggaa
atgaagtggattatcatgataattctaaaagatctcaagttgggaattagtgaaaaaagc
atatttcacgaatttcatccagatgccgaagacttgtttaatgtcacatgtgacctaaaa
atggtttgtgagaagttgagggatcgtagtcaacgtcataagcgtcaggacattgaggtt
ggaaaggctgtgcgaccgcaactagctatgagagtccgtgatgcagctgctgcatggaaa
aagcttcatggtaaggaggtacttgttgagtgtaaatttgatggcgatcgcattcaaatc
cacaaaaatggaactgagatacactactactccaggaattttcttgatcactctgaatat
gagcgtgggatgtcaaacattattgcacaaaatattctggttgataggtgcatacttgat
ggagaaatgttagtttgggataccactttgagtcggtttgctgagtttggatcaaatcaa
gaaatagccaaggcagcaaaagatggccttgacagtgacagacagttatgctatgttgca
tttgatattctttatgttggagacactagtgtcattcaccagagcttgaaggaacggcat
gaacttcttcaaaaggtggtgaagcctttgaagggtcgtttagagattttagtgccttat
ggtggtcttaatgctcatcgccctcctggggagccttgttggtcatgtcttgcgtacagt
gtggatgatgtggagagatttttcaaagaaacgattgaaaatagggatgaaggtattgtg
ttaaaagaccttggttccaaatgggaaccaagtgatagaagtgggaagtggttgaagtta
aagcctgagtacattcatgctggttctgacttagatgttctcattattggaggatattat
ggctctggacgtcgaggaggggaggtagctcaattcttagttggcttagcagatcgtcca
gacccaaatgcttatcccaggcgatttgtatccttctgcagagttggtactgggctggct
gatgatgaattggaagctgttgtaaacaaattgaagccttattttaggaaatatgaatac
ccaaagaagacgcaacctagtttttatcaagttacaaataactcaaaagagagacctgat
gtttggattgaaagcccggagaaatcaatcattctttctatcaacagtgatatccggacc
ataaggtctgaggtatttgctgcaccatacagcctgagatttccacgtatcgatagagtg
agatatgacaagccttggcatgagtgccttaatgtgcaatcatttgtagaacttgtgcat
tcaagtaatggtaccactcagaaagggacagtacagggagatgtgcaagatggtaaatca
agacacaaggaacacactagaaaggcagagaaaaaggctgtctcaatcgttccttctcat
tttattcaaactgacacatctagtgtgaagggggaaaccttaatatttacaaatcttatt
ttttactttgttaatgtgcctacaacctattctcttgattcatttcacaaaattattgtg
gagcatgggggaatgttctcaatgaatttgaacaagccagttacccattgtgttgcggct
gaaagcaaagggtttaagtatcaggcagcaaagcttcatggagaaattatccattactct
tgggtcttggattgttgctcacaaaagatgcttcttcctttacagccaaagtactttctt
ttcctttctgaatcatcaaaaaagaagttacagcaagaagttgatgaatattctgaccct
tattattgggaccttgaccttgcagatatcaaacagctcttaaacaatatccaaaggtca
gaaaatgccaacacgattgactattatagaaagaagtactgtccaaaggagaggtggtca
agttttcatggctgctctgtttacttctactgttcagctcagtcattgaaagctgattgg
caagtcttgttgagactcacactgaggaggttaaagcttgaagttttaatgggtggtggc
aaaatcagcaaggatctcaagcatgctacccatttggtaatcctatcagtgccaggattg
gatgtggactttgattctcttattaagagtttttcttgtgcagagaaacatcttttctgg
aagaaggggttacatgttgtgggatctcagtggctggaggattgcttagagaggggacaa
aagttacaagaagacctatatagtttgaaactcagtgaagttgaagaaacaaacttgtta
gaatgtgaattagaccaaaatctgaaggaagccataccagatttcaacagtgttcaaaac
caggttatgcctgtttcttgtgaaagtccaataaaacagagaggctgcaaagttcacctg
caagaatcaatgccattggtcactcctaattatggcaacaggaaaagaagacctgctggc
aagaatgcaaagaaaggaaaaacagtggtaagccaatgtcgaagggtaccgagacgttgt
ggaaagatgtctgttaagataaatgaagatgaatcagaagaaagtggttctgacgacaaa
acaaatgtggaagagatagaaaagggtgaagggaatactgaaggctatggaatcgttggt
agggaaaattctgagattcgacgaaatcaagtagcagaagatatagaattatcatgcagc
gccaagccagttgaactggaggctgcagaaaatatgagtaaagagtggtctgataaagct
cccgaggttgagatgtgtgaaccaaataatgaccaaagctgcaagaaagctgagaagtac
gaccttatggaactggatcaagagaattgtggtgcgaagtcagaaaagctagaagttatg
gttgatccggttcaggccatgttactggacatgataccaagcctcgggatcaagcatgtt
gaagctacaaactcattcgttgagaatgaaaagccacctgcagataacaatgctgagatt
ccagtggtagaggatgataagctagatgcagattttattgcaccgccagtaaagaaaaag
aaagtaagttacaaggatgtcgctggagaactactcaaggattggtaa

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